Phalacrocorax carbo (great cormorant): 104045950
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Entry
104045950 CDS
T08596
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104045950 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcao03041
]
104045950 (EFTUD2)
Spliceosome [BR:
pcao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104045950 (EFTUD2)
Complex C
U5 SnRNP specific factors
104045950 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
104045950
NCBI-ProteinID:
XP_009504301
UniProt:
A0A093TBA7
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGIVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactatatcgggccggagctggactcggac
gacgacgacgatgaattgggcagagagtccaaggatctggacgagctcgaggacgatgat
gatgatgacgatatgggggaccacgacgaggaccaccctgggatggaggtggtgctgcac
gaggataagaaatactatcccaccgccgaggaggtctacgggcccgaagtagagacgatt
gtacaagaggaagacacgcagcctctcactgagcctattattaaacctgtgaaaaccaaa
aaattctctctgatggaacagacgttaccggtcactgtctatgagatggatttcctggca
gatctgatggacaactcggagctaattcgaaatgtgactctgtgtgggcacctgcaccac
gggaagacatgttttgttgactgcctgatagaacagacacacccagaaatccggaagcgc
tatgaccaggacctttgctacactgatatattgttcacagagcaagagaggggagttggg
atcaagagcacaccagtgactattgttctgccggacaccaaaggaaagtctttcctcttc
aacatcatcgacactccaggtcacgtcaatttttctgacgaggtgacagctggccttcgt
atttcggacggcattgtactcttcattgatgcagctgagggggtgatgctgaacacagag
aggctgatcaagcacgcggtgcaggaaaggcttgcagtgaccgtgtgcatcaacaagata
gaccgactgatcctggagctgaaattgccccctacggatgcttattacaaactccgacat
atcgtagatgaagttaatggtctgatcagcatgtattccaccgacgagaacctcgttctg
tctccccttctgggaaacgtgtgtttctccagttcgcagtacagcatctgcttcacgctg
ggatcttttgcaaagatttatgcagacacatatggagatatcaattatcaggagtttgca
aagcggctctggggtgacatctacttcaacccaaagacccgcaagttcactaaaaaggcc
ccaacgagcagttctcagcgcagttttgtggagttcattctggagcccctgtacaagatc
ctggctcaggtggtgggggacgtggacacgaccctgcccaggactctggatgagcttggc
attcacctgaccaaagaggagttgaaactgaacattcggcccctcctgcggcttgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcatatcccctcc
ccaaaagtgggagccaagacgaaaatcgagcatacctacactggcggtgtcgactctgac
ctaggggaggccatgagtgaatgcgacccggatggtccgttgatgtgtcacacgacaaaa
atgtacagcacagatgacggtgttcagttccacgcctttggcagagtgctcagtggtacc
atccatgctgggcagcctgtgaaggtccttggagagaactataccctggaagatgaggag
gattcccagatctgcactgtcgggcgcctctggatctcggttgcgaggtatcacattgag
gtaaaccgggttcctgctggcaactgggtgctgatagaaggagtagatcagcccatagtg
aagactgcaaccgtcacagagcctcggggaaatgaggaggctcagatcttccgtcctttg
aagttcaacaccacatctgtcatcaaaatcgctgtagagccggtcaacccctcagagctc
cccaaaatgttagatggtctccgcaaagtcaacaagagttacccctctcttactactaag
gtagaagagtctggggagcatgtgatcctggggacgggggagctctatctggattgtgtg
atgcatgatctacggaagatgtattcagagatcgatatcaaggtcgccgatccagttgtg
acattctgcgagacagtggtggaaacatcctccctaaagtgctttgctgagacacccaac
aagaagaacaagatcacgatgattgctgagcctctggagaagggactcgcggaggacatt
gaaaatgaagtggtccagataacgtggaatagaaagaagctgggtgaattcttccagact
aagtatgactgggatttgctggctgcccgttccatctgggcctttgggccagacgccact
ggcccaaacatcctcgtagatgatacgctgccctcagaggtggacaagtcgctgctgggc
tctgtgaaggacagcattgtgcaaggatttcagtgggggaccagggaagggcctctctgt
gatgaactgatccgcaacgtgaagtttaagatcctggatgcagtgattgctcaggagccc
ttgcaccggggtggaggacagatcatcccgacggcccggagagtggtgtattccgctttt
ctgatggccacccctcgcctgatggagccctactacttcgtggaggtgcaggctcctgcc
gactgcgtgtctgcagtgtacacggtcctggccaggcggagaggccatgtgacgcaagat
gctccaatcccaggctcccctctctacaccatcaaagccttcatcccagccattgattca
tttgggtttgagacagacttgaggacccacacgcagggacaagccttctcgctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgttatccgacct
ctggagccccaaccagccccacatctggccagagagttcatgatcaagaccaggcgtagg
aagggcttgagcgaggacgtgagcatcagcaagttcttcgacgaccccatgttgctggag
ctggccaagcaagatgttgttctcaactaccccatgtga
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