Phalacrocorax carbo (great cormorant): 104049732
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Entry
104049732 CDS
T08596
Symbol
BRCA1
Name
(RefSeq) LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03440
Homologous recombination
pcao03460
Fanconi anemia pathway
pcao04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104049732 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
104049732 (BRCA1)
03460 Fanconi anemia pathway
104049732 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pcao01009
]
104049732 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcao04121
]
104049732 (BRCA1)
03036 Chromosome and associated proteins [BR:
pcao03036
]
104049732 (BRCA1)
03400 DNA repair and recombination proteins [BR:
pcao03400
]
104049732 (BRCA1)
Enzymes [BR:
pcao01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104049732 (BRCA1)
Protein phosphatases and associated proteins [BR:
pcao01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104049732 (BRCA1)
Ubiquitin system [BR:
pcao04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104049732 (BRCA1)
Multi subunit type E3
BRCC complex
104049732 (BRCA1)
Chromosome and associated proteins [BR:
pcao03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104049732 (BRCA1)
DNA repair and recombination proteins [BR:
pcao03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104049732 (BRCA1)
BRCA1-A complex
104049732 (BRCA1)
BRCA1-B complex
104049732 (BRCA1)
BRCA1-C complex
104049732 (BRCA1)
BRCA complex
104049732 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
104049732 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
BRCT_2
zf-RING_2
zf-RING_UBOX
BRCT_3
zf-C3HC4_3
RING_XB3-XBAT31
zf-Nse
zf-RING_5
zf-RING_6
zf-ANAPC11
zf-RING_10
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
104049732
NCBI-ProteinID:
XP_009508776
LinkDB
All DBs
Position
Unknown
AA seq
1768 aa
AA seq
DB search
MDLSVIAIGDIQNVLSAMQKNLECPICLDVVEEPVSTKCDHIFCRFCMFKLLSKKKKGVI
ECPLCKTEVTKRSLKENSRFKELIEGLLETIHAFELDTGVKFLNSHHFPKTSTEASAAEF
LHKESSVVQSKGFRNRKNSAKENGQENCTLEANVDTQLTDTRVKRRPLRNKTQKRGSEKG
IYIEFGSDSSEDLYKQSSNTGLEDKAALQTSSQEKLEELKSARKGTEYSCSAQPDKLGGK
ETILPNAVGESDFSMEGLSKKSTWSTAECAKPGQVNMTEYQSCPLNVLAVDLPTEQRDRI
GNASPLRKGDTSFFKSTEEMDAEQTRCHNKSKQFDLKDKSSENSLGKTKEVDIVQSVEAV
EMHEPENDSFCEKELPQEKLLQPETLHCAAVNQVSRKRLKRSIQKVNEWFSKSDEILSSD
SSQDDSAGATDVSGEDKSLSDKDSCVSEKTDPMVDSVEIAVVERNKRWSKQTADSIKDKI
FGKTYQRERKSNPPVILREILPTTKKEDVATDEKCLNNSSKDRLKRKRKTACVLQPEDFI
KKKDTEKADGHPQSVSWCLEDAEKKRSDESSAVNESYLSEKREDNTLAELEEGGRSMWKK
TAEKVTVKHCDGNVELNNCDQKSTKKSSSAAKRCRRSTRTMCALQLVVDRNSVSPDPAEP
QIDSYPSSEERRKVDSEQRQVRRSRRLQLLSEEMSKETGKGLVIKASRKHGSDHEGSVFG
DQRNMLVHTSECEDLCEPQGMSSYKSLTNLKGGDLEADEMQIRLKNSSDTAETGKSPFNP
TPSCEHSNCSSFAPDAGSHQKGEIQGSPFLLQSPSITVVQTASHPTEEMTEPCTTFPQDS
GHDTQNVPGDFRTEKLPIAKNVLELTKEAEDSELDTQYLRNIFRHSKRLSFSLYPTPMKA
CEVEDAASKTSKIPRADQVENKHRKYLKTENLQEEKTAAESLSRVCEKKKLKTRESACVS
PATCSVSSTECMHAGEYQDVSQFADQGNLRPIRTGTARSEDKNRLQKGEQGNEKTGSADI
GIESELRQNPIGSNRSQSDQSNTEGHIFKRTDLNTVDEIHFSSENNQAGKAKAVDGKGPL
PSSQSRSMICPATCQQRPAEFSCEVVGKKSSKRERKRVKGNEEQATQTASTGMPECLVTE
ALEEPLKVSSDFTGLSETPDGLLCSDDDIEENTSFSETDRKDGSAVFVKRSDNALVKELH
DRSVDSKPRSPGVQRSRRRARKLQSSDEESSEGEDLPCFQTLIFGKSVSAPLQINKQGTS
LVESSQSPVTLPHNGSHGDNSMQKMPEAAESNGCVSPSQESECSVNLFSSQSNTSEESLN
GAQELKKPLIQVHTSKQVSNVNDSKETFESCNXXXXXXXXXXXXXXREDPNVGANLGEAS
GYDSETSIVEDSCGLFSQGEILTTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDCGFLP
IPIHRELPHSSSEGTFGMEQMRQERENADEQKTGTRLNSASVLSRLSGNVTRSPDSSSSS
LRLLNPQTAEATDSSVAAQDANKSRAEERESKRSVRFPISALHNAAGKENATSPVVTNRK
EMSIVASGLNQSEHLVVQKFARKTQSTLSNHITEGTTHVIMKTDKDLVCERTLKYFLGIA
GRKWVVSYQWVIQSFKEGKILPEENFEVRGDVINGRNHQGPKRARQSLTEKIFKGFEICC
CGPFTDMTTEHLEWMVELCGASVVKQLHLFTHKTNSTAVVVVQPDAWMENTDYRAVQQKN
NVAMVTREWVLDSVACYTCQEFDAYLVS
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atggacctctcagtgattgctattggagatatacaaaatgtgctttcagctatgcagaag
aacctggagtgcccgatatgcttggatgtggtagaagagccagtttcaacaaaatgtgat
cacatattctgcaggttctgcatgttcaaactcctcagcaaaaagaaaaaaggtgtgata
gagtgtcctctgtgcaagactgaagttaccaagagaagcctgaaagaaaattccagattt
aaggaactaattgaaggcttgttggagactatccatgcgtttgaacttgacactggagta
aagtttttaaacagtcatcactttcccaaaacatccacagaagccagtgctgctgagttc
ttgcataaagaaagttctgtcgtccaaagtaagggcttcagaaacaggaagaacagtgct
aaagaaaatggacaagaaaactgtaccttggaagctaatgtggatacacagcttacagat
accagggtcaaaaggcgtcccctgagaaacaaaacccagaaacgtggctccgaaaaagga
atttatatagagtttggctctgattcatctgaagacctttataaacagtcaagcaatact
gggttagaagacaaagcagcacttcagacttcatctcaagaaaagctagaagaacttaag
agtgccaggaaggggactgaatactcttgcagtgcacagcctgacaagctgggtggaaag
gaaacaattctaccaaatgccgtaggtgaaagtgatttctctatggaaggcttgagcaag
aaaagcacttggagcactgctgaatgtgccaaacctggccaagtgaatatgactgaatac
cagagttgtcctttaaatgttcttgctgtagacctacccacagagcagcgtgacagaata
ggtaatgccagtcccttaaggaagggggacacatctttctttaagagcacggaagaaatg
gatgcagagcaaactcggtgccataataaaagcaaacagtttgacttaaaagataaaagc
tcagagaacagtttgggtaaaaccaaggaagtagatattgtacaaagtgtggaagctgtg
gaaatgcatgaacctgagaatgattctttctgtgaaaaagaacttcctcaggagaagcta
cttcagccagagacgcttcactgtgctgccgtgaatcaagtctctaggaagagactgaag
cgaagcattcagaaagtcaatgaatggttttcaaaaagtgacgagattctgtcttccgat
tcttcccaggatgattctgctggagcaactgatgtttcaggtgaagataaatctctatca
gataaagattcctgtgtttcagaaaagactgaccctatggtagattctgtggaaattgca
gtggttgaaagaaacaagagatggtcaaaacaaacagcagatagcatcaaagacaaaata
tttgggaaaacataccagagagagaggaagtcaaatccccctgttatcttgagagagatt
ttacctactacaaaaaaggaagatgtggctactgatgagaagtgcttgaataattccagc
aaagacagactaaaacgaaaaagaaagactgcctgtgtcctgcaacctgaggatttcatc
aagaaaaaagacacagaaaaagcggatgggcaccctcaaagtgttagctggtgccttgag
gatgctgaaaagaaaagatctgatgaaagttctgctgttaatgagagttacctctctgag
aagagagaggataatacactagcggaacttgaggaaggaggaagatccatgtggaaaaaa
actgctgaaaaggtgactgtcaagcactgtgatgggaacgtagaactgaataactgtgat
cagaaaagcactaaaaaaagtagttctgcagcaaaaagatgcaggcgttctactagaacc
atgtgtgctctacagttagtagtagatagaaactctgtttctcctgatccagctgagcca
cagattgatagctatccaagcagtgaagaacgaaggaaagttgattctgagcaaagacag
gtcaggcgcagcaggaggcttcagttactttctgaagaaatgtcaaaagaaacaggaaaa
ggactagtaattaaggcatcaagaaagcatggcagtgatcatgaagggtctgtctttgga
gaccaaaggaatatgttggttcacacttctgaatgcgaagacctgtgtgagccccagggt
atgtcaagttacaagtcactcactaatctgaagggtggtgatctagaagcagatgaaatg
cagattaggctaaagaattcatctgacactgcagaaactggaaaaagtcccttcaatcct
acaccttcatgtgagcattcaaactgtagttcctttgcacctgatgcaggttcccaccaa
aaaggtgaaatacaaggtagccctttcctcctgcagtctccttcaataactgtggtgcaa
actgcttcccacccaactgaagagatgactgaaccctgtactacttttccccaggatagt
gggcatgatacacagaatgttccaggggacttcagaactgaaaagctgccaatagctaaa
aatgttttggaattgactaaggaagctgaagatagtgagttagacacacagtatctgcgg
aatatatttaggcattcaaaacgcctatcatttagcctttatcctactcccatgaaggca
tgtgaggtagaagatgctgcttctaaaacttccaagataccacgtgctgatcaggtagaa
aataagcataggaaatatttaaaaacggaaaacttgcaagaagagaaaacggctgctgaa
agcttgagtagggtttgtgagaaaaagaagcttaagacccgtgaatctgcttgtgttagt
cctgcaacgtgctctgtcagcagcactgaatgtatgcacgcaggggaatatcaggatgtt
tcacagttcgcagaccaagggaatctgagaccaataagaacgggtactgctagaagtgaa
gacaaaaaccgattgcagaaaggagagcagggaaatgaaaagacagggtcagctgacata
gggatagaaagtgagttgagacagaatccaatcggaagtaatagaagccagagtgatcag
agtaatacagaagggcacattttcaaaagaactgatttaaacacagtcgatgaaatacac
ttcagttcagaaaacaatcaagcgggaaaggccaaagctgttgacggcaaaggaccacta
ccgtcttctcagtccagatcaatgatttgtcctgcaacttgtcagcaaaggcctgctgaa
ttcagctgtgaagtcgttgggaagaaaagtagcaaaagagaaagaaaacgagtaaagggg
aatgaagaacaagcaacccaaactgctagcacggggatgcccgagtgtttagttacagag
gctctagaagaacctcttaaagtgagtagtgattttacaggcttgtctgaaacccctgat
ggcttactgtgctctgatgatgatattgaagagaataccagcttttctgaaactgatagg
aaagacggatctgctgtgtttgtaaaaagaagtgacaatgccctggtaaaagaactacac
gatagaagtgttgattctaagccaagatctccaggtgttcaaagatctcgaagaagagca
cggaaactgcaatcttcagatgaagaatctagtgaaggtgaagatttaccgtgttttcag
acattaatatttggcaaatcagtaagcgcgcctttgcagatcaataaacaagggacatct
ctggtagagtcttcacaaagccctgtcacactgcctcacaacggaagtcatggtgacaat
tctatgcagaagatgcctgaagctgccgaaagtaatgggtgtgtttcaccaagccaggag
tcagaatgctctgtcaacttattttcttcccagtccaacacgtctgaagaatcactgaat
ggcgcacaagagctgaaaaaacctttaatacaagtccatacgtccaaacaagtaagcaat
gtgaatgatagcaaagaaacttttgaaagttgtaatnannnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnngccgagaagacccaaacgtgggagcaaacctaggtgaagcatct
ggatatgacagtgaaacaagtattgtagaagattcatgtggactgttctctcagggtgaa
atcctaacgacacagcagaagaatgccatgcaaaataacctaaaaaagcttcagcaagaa
atggctgtacttgaagcagtgctaaagcagcacggaagtcaggactgcggatttttacct
atccctatccatagggaactgccacattccagtagtgaaggaacatttggaatggaacaa
atgagacaagaaagagaaaacgcagatgagcagaagactgggaccaggctaaacagtgca
tctgtcttatcacgcctctctggaaacgtgaccaggagtccagatagctcttcttcatct
ctaaggcttcttaaccctcaaactgcagaagcaacagatagttctgttgcagctcaggat
gctaataaaagccgcgctgaagaacgtgaatcgaagagaagtgtgcgttttcctatatca
gctctgcacaatgcagctgggaaagaaaacgccacgagtccagttgtaactaacagaaaa
gaaatgtcaatcgtggcatcaggtctgaatcaaagtgaacatttggtggtccagaagttt
gcaagaaaaactcagagcactttatctaatcacattactgaaggaacaacccatgtcata
atgaaaacagataaggatctggtgtgtgaacggacactgaagtactttctgggtattgca
ggaagaaaatgggtagttagttatcagtgggtaattcagtcttttaaagaaggaaagata
ctgcctgaggagaactttgaagttagaggagatgtaatcaatgggagaaaccaccaaggt
cctaaaagggctaggcagtctctgactgaaaagatctttaaaggctttgagatctgttgc
tgtggacctttcactgatatgactacagaacatctagaatggatggtggagctttgtggt
gcctctgtagtgaagcaacttcatctgttcacccacaaaacaaattcaactgctgtcgtg
gttgtgcagccagatgcatggatggaaaacacagattacagagcagtccagcaaaagaac
aacgttgccatggtgactcgagagtgggtgttagacagtgttgcttgctacacatgccag
gagttcgatgcttaccttgtgtcctaa
DBGET
integrated database retrieval system
