Phalacrocorax carbo (great cormorant): 104049890
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Entry
104049890 CDS
T08596
Symbol
PRKDC
Name
(RefSeq) DNA-dependent protein kinase catalytic subunit
KO
K06642
DNA-dependent protein kinase catalytic subunit [EC:
2.7.11.1
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03450
Non-homologous end-joining
pcao04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104049890 (PRKDC)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
104049890 (PRKDC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pcao01001
]
104049890 (PRKDC)
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcao03032
]
104049890 (PRKDC)
03400 DNA repair and recombination proteins [BR:
pcao03400
]
104049890 (PRKDC)
Enzymes [BR:
pcao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104049890 (PRKDC)
Protein kinases [BR:
pcao01001
]
Serine/threonine kinases: Other
PIKK family [OT]
104049890 (PRKDC)
DNA replication proteins [BR:
pcao03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
104049890 (PRKDC)
DNA repair and recombination proteins [BR:
pcao03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
104049890 (PRKDC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNAPKcs_CC5
DNAPKcs_CC3
PI3_PI4_kinase
FAT
DNAPKcs_CC1-2
FATC
Motif
Other DBs
NCBI-GeneID:
104049890
NCBI-ProteinID:
XP_009508957
LinkDB
All DBs
Position
Unknown
AA seq
2479 aa
AA seq
DB search
IDSSVSCNTNHEAFTAVFNTYTSLLTDQSLGLNLKGQALIILPFFTNLTGEKLYDLKNAL
DQLVAFNFPMRSDEFPRGTLKHNNYVDCTKKFLDALELSQSPMLLQLMTEVLCRDHRHFM
EDLFQASFKRISRRSTTDKQVILLDTVHKMFQSKDLLSNTTRQAFMDRSLLTLLWHCSLD
ALREFFGKIIVQAMDALNSRFTKSNEYIFDTQVTKKTGYYKLLEVMYARLSKEDVYSKES
KINQAYRGSMSVEGNELTKTLIKSCYDAFTENMAGESQLLEKRRQYHCAAYNCAIAVISC
VFTESKFYQGFLFTEKSEKNLLIFENLIDLKRQYTFPVEIEMPLERKKRYIAIRKEARDA
GNTDQDEPKYLASASYMMDSSLSEEMSQFDFSTGVQGFSYSSQDVTASSTRLRRKETTEY
MVLNDEMELEMDELNQHECMASMTTLIKHMQRNNITPKVEEGTVPVDLPLWMKFLHGKLG
NPSVPLNIRLFIAKLIVNTEDVFRPYAKQWLGPLLQLVVSGNNGGEGIHYMVVEIVVTIL
SWTSVTTPNGNIKDEILANRLLEFLMKNAFHQKRAVFGHNLEIIKTVIECWKNCLSIPYS
LIFEKFSSGDPDTKDNSVGIQLLGIVLANNLPPFDPKCEIDRVRYFQALTSNMGLLKYKE
VYAAAAEVLGLALQYIAERENVLEHPVYDCVIRQLKHHQNTQQDKFIQCLNKVVKNFPPL
ADRFMNAVFFLVPKLHGVMKTYCLEVIMCQAEEIPDLHLQLKSKDFIQIMNHRDDERQRV
CLDIVYKMLSKLKPLELKELLPGVTGFISHPSVICRQRMYDILMWIYDNYSDPESQADGD
SQEILKLAKEILLQGLIDENAELQLIVRNFWSDETRLPANILDRMLALLNSLYSTKIETK
YLSLITNFLLEMTSKSPDYSRKIFEHPLSECKFQDFVIDSSWRYQSTMLTPMFLETQVSQ
SIHRNLSQERSLSASGSIGGRVRATQRQYEFTPTQQASGRSSFNWLTGSSIDTLAEYTVP
SSSESLSSSMLLVNKWSEKFKQATFKPVGPDFGKKRLGLPGDEVDSKTKGIEERAEILRL
RRRFLKDREKLSLIYARKGVAEQKREKEMKSELKMKNDAQVTLYRSYRVGDLPDIQIEYC
SLIAPLQGLAQKDPTFAKQLFSSLFGGIFHEVEKSKTSSEKKAIIQKLLNDFNNFLSVSL
SYFPPFIACIQEMSYQHRELLELDSANVTTSCLASLQQPVGILLLEHALMALSTAEEPPS
KRVCGRTELPADVIRWIELAKLYRSLGDYDVLRGIFSGKIGTKEITQKALLAEARSDYAE
AAKYYDEALSKEAWQDGEPTEVEKDFWELASLECYDHLTEWKSLEYCATINIDSGKPPDL
SKTWNDPYFQETYLPYIIRSKLKLLLSGENDQTLLTFIDEAMKTEQKKAIIEMHYSQELS
LLYILQDDFDRAKYYISNGMQIFMQSYASIDTLLYQSRMTKLQSVQALTEIQDFINFMTK
RSNLASQISLKRLLRIWTSRYPDAKMDPMNIWDDIITNRCFFLDKLQEKLLCDQANDSME
VDEEYDAGDQMEVDQQGEDIYSMIKSCKFNMKMKMMESARKQNSFSLAKKLLKDLRKEAK
TREDWLVRWNYAYCRFTHSCSQNQSCPERILSVLKTISLLEDTKSDYLSKNITTFRNQSL
LLGTTYHIMANAFSQDPRCLEQMEEEKAGKIAVLSGESLESPEKVLAGLNKKAFQCFSSA
VRKSEEEVQSHSMEHVDVMGVTDAYMTLVRFCDQHLHKEEEGLLEINTEDLQLFPAIVVE
KMIKALKLNSREARLRFPRLLQIIERYPAETLGLVKRELPSVPCWQFIGWISQMMALLDK
DEAVAVQHTVEEIANTYPQAIIYPFMISSESYCFKDTATGCTNKAFVERIKHKLDRGGVV
EDFVRSLEQLSNPIMLFKDWVEDVRNELVKAQRNKNKLKEMYEGMYKNLGNLEAPGLGLL
RKRFIQVFGKDFDNHFGKGGSELLNMKASDFDAIAASLLSEMNKNHKEPGNLKECSPWMS
EFKAEFFRNELEVPGQYDGKGKPLPEYHAKISGFDERISVMESLRKPKRITIRGSDEREY
PFLVKGGEDLRQDQRIEQLFDVMNIILSQDAMCSQRNMQLKTYQVIPMTTRLGLIKWLEN
TCTLKEFLKNSMSKEEDANYNSMEGPRATYSEWLSKTGGKAQGTSRYHNMYRNANRKETV
RSFRKIGKAPEDLLRRAFVKMSTSPEAFLFLRSHFASSHALMCISHWILGIGDRHLSNFM
INKETGGMVGIDFGYAFGSATQFLGVPELMPFRLTRQFVNLMMPVKEWGLIYSVMVHALR
AYRAAPDLLISTMDVFVKEPSLDWKNFEQRQLKKGGTWIKEINTSEVNWYPLQKVSYVKR
KLTGANPAIITCDELRLGHEKSLPYNYFVAVARGNADHNVRAKEPEDGLSEETQVRCLID
QATDPNILGRVWEGWEPWM
NT seq
7440 nt
NT seq
+upstream
nt +downstream
nt
atagactcttcagtttcttgcaataccaaccatgaagcatttacagctgtttttaatacc
tataccagtctacttactgatcagagtttaggcttaaatcttaagggccaagcactgata
attcttccattcttcactaatttgactggagaaaaactttatgaccttaagaatgctctt
gatcaacttgtagctttcaattttcccatgaggtcagatgagtttcccagaggaaccttg
aagcacaataactatgtagactgcactaaaaagtttttagatgcattagaattgtctcag
agtccaatgttgctgcagttgatgacagaagtgctctgtagggaccacagacatttcatg
gaggacttatttcaagccagcttcaaaagaatttccagaaggagtaccactgacaaacaa
gtgatactgttggacactgttcacaaaatgttccagagcaaagaccttctttcaaatact
acccgtcaagcatttatggatcgctccctgctcactctcttgtggcactgcagcttagac
gcactgagagaattctttggcaagattatagtacaagctatggatgcacttaattccagg
tttacaaagtccaatgaatatatttttgatacacaagtgaccaagaaaacagggtattac
aagctgctagaagtgatgtatgcgcgtctttcaaaagaggatgtttactccaaggaatct
aaaattaaccaagcttaccgtggttccatgagcgtagaaggaaatgaacttaccaagaca
ctaataaagtcatgttatgatgcatttacagaaaacatggcaggagagagtcagctgctg
gagaagaggagacagtatcactgtgcagcatataattgtgctattgctgttattagctgt
gtcttcactgaaagtaaattttatcaaggctttctttttacagaaaaatcagaaaagaac
ttgctgatttttgaaaatttgatagacctgaagcgtcagtatacatttcctgtagaaatt
gagatgcctctggaaaggaagaagcggtacattgctattagaaaggaggccagggatgca
gggaataccgatcaggatgaacccaaatatttagcttctgcatcatacatgatggatagc
agtttgagtgaggaaatgagtcagtttgatttttctactggagtccaaggtttttcttat
agctcccaagatgttacagctagcagcactcgtctcaggagaaaggagaccacagaatac
atggttttaaatgatgaaatggaactggaaatggatgaactcaaccaacatgaatgtatg
gcttctatgaccactctgattaaacatatgcagaggaacaacattacgcccaaagtggag
gaggggacagttccagtagatcttcctctttggatgaaatttctgcatggcaaattagga
aacccatcagtaccactaaatattcgcctcttcatagcaaagcttattgttaatactgag
gatgttttccgaccttatgcaaagcagtggcttggtccattgctgcagcttgttgtttct
gggaataatggaggtgaagggattcattacatggtagtggaaatagtagttactatcctt
tcctggacaagtgtaaccacacccaacgggaatattaaggatgagattttagctaacaga
ttgcttgaattcttaatgaagaacgcctttcaccaaaaaagagctgtgttcggacacaat
ctcgaaatcatcaagacagttatagagtgttggaagaactgtctctccataccgtacagt
ttaatatttgaaaagttttctagtggagatcctgatacaaaagacaactcggtgggaatt
cagcttctgggaattgttcttgctaacaatttacctccctttgacccaaagtgtgaaata
gatcgtgtcaggtattttcaggctttgaccagcaacatgggcttattaaagtataaagaa
gtttatgcagctgcagcagaagtgttgggacttgctcttcaatacattgctgagagagaa
aatgtgcttgaacatccagtttacgattgtgtcataagacaattaaaacatcatcagaac
acccaacaggataagtttattcaatgcttgaataaagttgttaagaattttccacctctt
gctgacaggtttatgaatgcggtattctttttggtacccaaacttcatggcgtgatgaaa
acctactgtctggaagtaataatgtgccaggcagaagaaatccctgatctccacttgcag
ttaaagagtaaagactttatccagatcatgaatcacagggatgatgaaaggcaaagggtt
tgtttggatatagtgtacaagatgctgtctaagctaaaaccactagaacttaaagaactt
cttcctggagtgacagggttcatttctcacccttctgtaatatgtcgacagcgcatgtat
gatattctgatgtggatttacgataattacagtgatccagaaagccaagcagatggtgat
tctcaggaaatactcaaactggcaaaagaaatcctgctgcaaggactgattgatgagaat
gctgaactgcaattaattgttaggaatttttggagtgatgagacaaggttacctgcaaat
attcttgatcgcatgctggcattgttaaattctttatattccaccaagattgaaacaaag
tacttgagtctgatcacaaattttctgcttgaaatgactagcaagagcccagattattcc
agaaaaatatttgagcatccactgtctgaatgcaaatttcaggactttgtaattgattcc
agctggcgttaccaaagtactatgctcacacctatgtttttggagactcaagtttctcag
agtatccacaggaatttatcacaagaaagatctctttctgcttctgggtcaatcggtggt
cgagtgagggctacccaacggcaatatgaatttacacctacacagcaagccagtggtaga
agttctttcaattggctaacaggaagcagcattgacacactggcagagtatacagttcct
tcatcctctgaatccttgtcgtcatccatgctgttagttaacaaatggagtgaaaaattt
aaacaagcaacctttaaaccagtggggccagattttgggaaaaaaaggttgggtttgcct
ggagatgaggtagacagcaaaaccaaaggtatagaagaacgagcagaaattctaagactg
cggaggcgtttcttgaaggacagagagaaactcagtctgatttatgctagaaaaggtgtg
gctgaacagaaaagagaaaaggagatgaaatctgagctgaaaatgaagaatgatgcccag
gtcactttgtacagaagttaccgagtaggagaccttcctgacatccagattgaatactgc
agtctcattgcccctctgcagggccttgcccagaaagatccaacatttgccaagcagctt
ttcagcagtttgtttggtggaatttttcacgaggtagaaaaatctaaaacttcttctgag
aaaaaagctatcatccagaagctgctgaacgacttcaataatttcctgagtgtgagcctg
tcttacttcccaccattcattgcatgcatccaggaaatgagttaccagcacagagagcta
ctagaactggattcagctaatgtaaccacgagctgcctcgcaagtctacagcagccagtg
ggcatccttcttctggagcacgccctgatggctttgtccactgcggaggagcccccatcc
aagcgggtgtgtgggaggacagagcttcccgcagatgtgatcagatggattgaacttgct
aagctctaccgatctcttggggattatgatgtccttcgtggcattttcagtggtaagatt
gggactaaggaaattacacagaaagcgttgttggcagaagcaaggagtgattatgctgaa
gcagctaaatattatgatgaggcactttccaaagaagcctggcaagatggagagccaaca
gaagtggagaaggacttctgggaacttgcatctctggaatgctatgaccacctcacagag
tggaagtctctggagtattgtgctaccattaatatcgatagtggaaaacctccagaccta
agcaaaacatggaatgatccatattttcaggagacgtatctgccatacataatacgcagt
aagttgaagttactgctcagtggggaaaatgaccagactttgctaacttttattgatgag
gcaatgaagacagaacagaagaaagccattatagaaatgcattacagccaagaacttagt
ctcctttacatcctgcaagatgattttgacagagccaaatattatattagcaacggcatg
cagatcttcatgcagagctatgccagcattgatactttattatatcaaagtcgaatgacc
aaactgcagtctgtacaagctttgacagaaatacaggatttcatcaattttatgaccaaa
agaagtaacttagcttcacaaatttcccttaagagacttctcagaatttggacaagcaga
tatccagatgctaaaatggatcctatgaacatctgggatgatatcattacaaatcggtgt
ttctttcttgataaactgcaggagaaacttctctgtgatcaggccaatgatagtatggag
gtggatgaagaatatgatgctggtgaccaaatggaagtggatcaacagggtgaagacatt
tactcaatgattaaaagctgcaaatttaacatgaaaatgaagatgatggaaagtgccagg
aaacagaacagcttctcacttgcaaagaagcttctgaaagacctacgcaaagaagccaaa
acaagggaagactggctggtgagatggaattatgcctattgccgctttacgcacagttgc
agccagaaccagagttgtcctgaacgcatactttcagtgttaaaaaccatctccctgctt
gaagataccaaatctgactatcttagcaagaacataacgaccttccgaaaccagtctctt
cttctgggtactacataccacatcatggccaacgcttttagtcaggatccaagatgtctt
gagcaaatggaggaagaaaaagctgggaaaatagcagtactatcaggagaaagtcttgag
agtcctgaaaaggtattggcaggtctgaacaagaaggcctttcagtgtttcagcagtgcc
gtgaggaagtctgaagaggaggtgcagtcccactccatggaacatgtagatgtcatggga
gttactgatgcgtatatgactttggtcagattctgtgaccagcatctgcataaggaagaa
gaaggcttgcttgaaattaacactgaagatctgcagctattcccagctattgtggtggag
aaaatgataaaagctttaaaactgaactccagagaagccaggctgagatttcctagactg
ctgcaaataattgaaagatatccagcagagacactgggtctagtgaaacgagagcttcct
tcggttccctgttggcagttcattggttggattagccagatgatggcactacttgacaag
gatgaagcagtagccgtgcaacatactgttgaagagatcgcaaatacctatccccaggca
atcatctaccctttcatgatcagcagtgaaagttactgtttcaaagatactgcaactggt
tgtacgaataaggcatttgtagaaaggatcaagcataagttggacagaggaggagtggtt
gaagattttgttcgctccctggaacagctctctaatcccataatgctttttaaggattgg
gttgaggatgtcagaaacgagttggtaaaagctcagaggaataaaaataagctcaaggaa
atgtatgaagggatgtacaagaatttgggaaatttagaggctcctggccttggattgctg
aggaaaaggtttattcaggtgtttgggaaggacttcgataatcattttggaaaaggtggt
tcagaactgttgaatatgaaggctagtgactttgatgcgattgcagcttctctcctctca
gaaatgaacaaaaaccataaagaacctggaaacctgaaagaatgttcaccgtggatgagt
gaattcaaagctgagttctttaggaacgaactagaagttcctggtcagtatgatggaaaa
gggaaaccactgcctgagtaccacgcaaaaatctctggatttgatgaacggataagtgta
atggaatccttgaggaagccaaaacgtataacaatccgaggcagtgatgagcgggagtat
ccttttcttgtcaaaggtggtgaagacctgcggcaagaccaacgtattgagcaactgttc
gatgtaatgaacattatcctttcccaagatgctatgtgtagccaaaggaatatgcagtta
aaaacataccaggtcatccccatgacaacaagactgggactcatcaagtggctggaaaat
acttgtactttaaaagaattccttaagaacagcatgtctaaagaggaagacgccaactat
aacagcatggaaggacctcgtgctacctactctgagtggctgtccaagacaggtgggaaa
gcacaaggcacctctcgataccataatatgtacagaaatgctaaccgtaaggaaacagtt
aggtctttcagaaaaatagggaaagctccagaagacctgctgcggcgagcctttgtgaaa
atgagtacgtctcctgaagccttcctgtttctgcggtcccattttgcgagctctcatgca
ctgatgtgcatcagccactggatacttggtatcggagacagacatctgtccaacttcatg
attaacaaggagacaggtggcatggtgggaatagactttggatatgcgtttggctcagct
acgcagtttttgggtgtgccagagttgatgccttttcgactgactcgccagtttgttaat
ctgatgatgccagtgaaagagtggggtctcatttacagcgtgatggtgcatgccctaagg
gcttatcgtgcggctccggatctcctcatcagcacaatggatgtatttgtaaaagagcct
tctttggactggaagaacttcgaacaaagacagctgaaaaaaggaggcacgtggattaag
gaaataaacacatctgaagtaaactggtaccctttgcaaaaagtcagctacgtcaaaaga
aagcttacaggtgccaatccagcaataatcacttgtgatgaactgcgcctgggccatgag
aagtctcttccttataattattttgtagctgtggctcgtggtaacgctgatcataatgtc
agagccaaagagccggaggatggactttcagaagagacccaagtgagatgcctgatcgat
caagcgacagatcccaatattcttggcagagtctgggaaggatgggaaccctggatgtga
DBGET
integrated database retrieval system
