Pseudoalteromonas carrageenovora: PC2016_1109
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Entry
PC2016_1109 CDS
T06565
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03030
DNA replication
pcar03410
Base excision repair
pcar03420
Nucleotide excision repair
pcar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PC2016_1109
03410 Base excision repair
PC2016_1109
03420 Nucleotide excision repair
PC2016_1109
03430 Mismatch repair
PC2016_1109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcar03032
]
PC2016_1109
03400 DNA repair and recombination proteins [BR:
pcar03400
]
PC2016_1109
Enzymes [BR:
pcar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PC2016_1109
DNA replication proteins [BR:
pcar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PC2016_1109
DNA repair and recombination proteins [BR:
pcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PC2016_1109
NER (nucleotide excision repair)
GGR (global genome repair) factors
PC2016_1109
MMR (mismatch excision repair)
DNA ligase
PC2016_1109
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PC2016_1109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QBJ71336
LinkDB
All DBs
Position
I:1236742..1238760
Genome browser
AA seq
672 aa
AA seq
DB search
MSSSISEQVNHLRSTLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQHPEFLTPDSPT
QKVGGAALSKFEQVAHQVPMLSLDNAFSEEEFSAFNRRIKERLMSTGELTFCCEPKLDGL
AVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPAELEVRGEVFMDSAG
FDKLNTEAQKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHY
QQLAKLTDWGLPLCPETKLLEGTQAALEYYSDILTRRGELKYEIDGVVIKINEKALQERL
GFVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN
GDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPKTCPICDSHVEKVEG
EAVARCTGGLVCPAQRKQAIKHFASRKALDVDGLGDKIVDQLVDRELVKTPADLFILKQG
HFESLERMGPKSAKNLVGALEDAKATTLAKFLYSLGIREVGEATAQNLANHFLTLENVTN
ASIDSLTQVSDVGAIVATHVRGFFDEQHNVDVVNALIEQGINWPALSAPSKGEQPLADLT
YVLTGTLNTLNRNDAKARLQQLGAKVAGSVSAKTDALVAGEKAGSKLTKAQDLGIEILSE
EDLIALFEKYNG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcagcattagtgagcaagttaatcatcttcgtagtactttagagcagcacaac
tacaattattatgtgcttgataccccaagcatcccagatgctgaatacgataggctatta
cgcgaactcagtgcacttgaaacccagcacccagaatttttaacacccgattcgccaact
caaaaagtgggcggggcagctttgagtaaatttgaacaagttgctcaccaagtgcctatg
ttatcgctcgataatgcttttagcgaagaagagttcagtgcgtttaatcgccgtataaaa
gagcgtttaatgagtacaggcgagcttactttttgctgtgaaccaaaactagatggccta
gcagtctctattatttaccgtgatggtgtattagtgcaagcagcaacgcgaggggatgga
tttacaggtgaaaacattacccaaaatgtaaaaacaattcgtaatgtaccactaaagctg
cgtggcgattatcctgcagagcttgaagtgcgcggcgaagtatttatggatagtgctggc
tttgataaattaaatactgaagcgcaaaaacgcggtgataaagtgtttgtaaatccacgt
aatgccgcagctggaagtttgcgccagcttgattcaaaaattaccgctaaacgcccgttg
atgttttatgcttatagtacaggtttggttgccgatggcagcatccctgaggatcattac
cagcaattggctaaattaaccgattggggattaccactttgcccagaaactaaattgtta
gaaggcactcaagcggcacttgaatattatagcgatattttaacgcgccgtggcgagctt
aaatatgaaattgatggcgtagtaattaaaataaacgaaaaagccttacaagagcgttta
gggtttgtagcacgtgctccgcgctgggctattgcgtataaatttccggcgcaagaagag
gttactcaattactcgatgtagagtttcaggttggtcgtaccggtgcaataacaccggtt
gcccgtttagagcccgtatttgttggcggtgttacggtctcaaatgccacgcttcataat
ggtgatgaaattgcccgtttgggtgtaaaagttggggataccgttattattcgccgtgct
ggcgatgtaattccacaaattacacaagtagtgcttgagcgccgccctgacgatgctcgc
gatattgagtttcctaaaacgtgcccaatttgtgactcccacgtagaaaaagtggaaggt
gaagctgtagcccgttgtactgggggccttgtatgcccggcacagcgcaaacaggctatt
aagcactttgcctcacgcaaagcgctagatgttgacggcttaggcgataaaatagttgat
caattggtcgatagagagctggttaaaacgcccgcagatttgtttattttgaaacaaggc
cattttgaatcgcttgaacgtatgggtcctaaatcggctaaaaatttagtcggtgcgctt
gaggatgcaaaagccactacgcttgctaaatttttatactctttaggcattagagaagta
ggtgaagcaactgcacaaaacttagctaatcactttttaacccttgaaaatgtaacaaat
gccagcatagatagtttaacgcaagtaagtgatgtaggcgctattgtagcaactcatgtt
cgtggcttttttgatgagcaacataatgttgatgtagttaatgcgttgatagagcaaggt
attaattggcctgcgcttagtgcaccatcaaaaggtgagcaacctttggctgatttaacg
tatgtacttacggggacattaaatacattaaatcgaaatgacgcaaaagcccgtttacag
caactaggtgcaaaagtggccggcagtgtgtcggctaaaacagatgccttagtggcaggt
gaaaaagcaggctcaaaacttaccaaagcacaggatttaggtattgaaatacttagcgaa
gaagatttaattgccttgtttgaaaaatataacggttag
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