Parolsenella catena: Pcatena_03570
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Entry
Pcatena_03570 CDS
T05797
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcat
Parolsenella catena
Pathway
pcat03030
DNA replication
pcat03410
Base excision repair
pcat03420
Nucleotide excision repair
pcat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pcatena_03570 (lig)
03410 Base excision repair
Pcatena_03570 (lig)
03420 Nucleotide excision repair
Pcatena_03570 (lig)
03430 Mismatch repair
Pcatena_03570 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcat03032
]
Pcatena_03570 (lig)
03400 DNA repair and recombination proteins [BR:
pcat03400
]
Pcatena_03570 (lig)
Enzymes [BR:
pcat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pcatena_03570 (lig)
DNA replication proteins [BR:
pcat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pcatena_03570 (lig)
DNA repair and recombination proteins [BR:
pcat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pcatena_03570 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pcatena_03570 (lig)
MMR (mismatch excision repair)
DNA ligase
Pcatena_03570 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pcatena_03570 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
C1_1
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BBH49770
UniProt:
A0A3G9K9L3
LinkDB
All DBs
Position
405587..407749
Genome browser
AA seq
720 aa
AA seq
DB search
MASGNAQVEGQASLFGDEDRLAASPRARAAELNRLLNIYAYRYYALDDPVVTDAEFDRLL
RELHAIEELHPELVSPDSYTQRVGGYVSDQFEPVRHAQRMYSIDDAMNLAELDEWLARTD
EALGSTPEHPVAYTCELKIDGLGVALTYRDAQFVRAATRGDGTTGENVTANVLTIKDVPH
ALAPEGLASVADAGLGHSVEVRGEVYMPKHSFVRLNEGADAAGREPFANPRNAAAGSLRQ
KDPKVTAHRDLETFIYAVADEAPLSVTTQWQFLQWLRACGFSVNPNAARCTSAHEVHDFC
ARALAHREELDYDIDGVVVKVDSFAGQEALGFTARAPRWAIAFKFPPEEKRTVLREIRIQ
VGRTGVLTPVAEFDPVLVAGSTIARATLHNIDEVRRKNVRVGDTIVVHKAGDVIPEVVGP
VLELRPADSVDFEMPALCPSCGSPVVREEGEVAYRCVSIDCPAQAHERLCHWVSRKAMDI
DGLGDELIGKLVAAGLVSDVADFYDRLTATALAGCPTGRVSVAGDDILVGKTIAAKVMEQ
VEQSRRAGLARVLFGLGIRHVGEQVARSIAREFGSMGALMEADEERIAAVEGVGPKIAHS
VREFLSVPENLSVIERLREARVSLEEQRSADEPAQTLSGLTFVLTGTLERHKRDEAKAAL
QAFGAKVSGSVSKKTSYVIAGAAAGSKLTKAQQLGVPVLDEDALEQILATGEVPGGEDDE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgggaacgcgcaggttgagggacaggcatcgctgtttggcgatgaagaccgg
ctggccgcctcgccgcgcgcccgcgccgccgagctcaaccgcctgctcaacatctacgcc
tatcgctactacgcgctcgatgaccccgtggtcacggacgccgagttcgaccgcctcctt
cgcgagttgcatgccatcgaggagctgcatcccgagctcgtctcgcccgactcctacacc
cagcgcgtaggcggctacgtctccgaccagttcgagcccgtgcgccacgcgcagcgcatg
tactccatcgacgacgccatgaaccttgccgagctcgacgagtggctcgcgcgcacggac
gaggcgcttggctccacgcccgagcacccggtggcctatacgtgcgagctcaagatcgat
ggcctgggcgtggcgctcacgtaccgagacgcccagttcgtgcgcgccgccacacgtggt
gacggcacgacgggcgagaacgtcacggccaacgtgctcacgatcaaggacgtgccgcac
gcgctggcgcccgagggcctcgcgagcgtggcggacgcgggcctcggccactcggttgag
gtgcgtggcgaggtctacatgcccaagcacagcttcgtgcggctcaacgagggcgccgac
gccgccggccgcgagccgtttgccaacccgagaaacgccgccgccggcagcctgcgccag
aaggaccccaaggtcacggcccaccgcgacctcgagacgttcatctacgccgtggcagac
gaggctccgctgtccgttaccacgcagtggcagttcctgcagtggctgcgtgcctgtggc
ttcagcgtgaaccccaacgccgcccgctgcacgagcgcccacgaggtgcacgacttctgc
gcccgcgcgctcgcgcaccgcgaggagctcgactatgacatcgacggcgtggtggtgaag
gtggactcgttcgcgggacaggaggcgcttggcttcacggcgcgcgcgccgcgctgggcc
atcgcgttcaagttcccgcccgaggagaagcgcacggtgctgcgcgagattcgcatccag
gtgggccgcacgggcgtgctcacgccggtcgcggagttcgacccggtgctcgtcgccggc
tccacgatcgcgcgcgccacgctgcacaacatcgacgaggtgcgccgcaagaacgtccgc
gtgggcgacacgatcgtcgtgcacaaggcgggcgacgtcatccccgaggtcgtgggcccc
gtgcttgagctgcgccctgcggactccgttgacttcgagatgccggcgctgtgtcccagc
tgcggcagccccgtcgtgcgcgaggagggcgaggtggcctaccgctgcgtctccatcgac
tgcccggcgcaggcccacgagcgcctgtgccactgggtgagccgcaaggccatggacatc
gacggcctgggagacgagctcatcggcaagctcgtggccgcgggcctcgtctcggacgtc
gcggacttctatgaccgcctcacggccacggcgctcgccggatgccccacgggccgcgtg
agcgtggccggcgacgacatcctcgtgggcaagaccatcgccgccaaggtgatggagcag
gtcgagcagagccgccgtgcggggctggcgcgcgtgctgttcggcctgggcatccgccac
gtgggcgagcaggttgcgcgctccatcgcccgcgagtttggctccatgggcgcgctcatg
gaggccgatgaggagcgcatcgctgccgtggagggcgtggggcccaagatcgcccacagc
gtgcgcgagttcctctccgtgcccgagaacctctccgtcatcgagcgcctgcgcgaggcg
cgcgtgagccttgaggagcagcgctcggcagacgagccggcacagacgctctccggcctc
acgttcgtgctcaccggcacgctcgagcgccacaagcgagacgaggcaaaggcggcgctg
caggcgtttggcgccaaggtctccggttccgtctccaagaagacgagttacgtcatcgcc
ggtgcggcggcaggctcgaagctcacgaaggcccagcagctgggcgtgccggtgctcgac
gaggatgcgctcgagcagattctggccaccggcgaggtgccgggaggcgaggacgatgag
tag
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