Pseudomonas cavernae: D3880_01630 Help Entry D3880_01630       CDS       T08208                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pcav  Pseudomonas cavernae Pathway pcav03030   DNA replication pcav03410   Base excision repair pcav03420   Nucleotide excision repair pcav03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pcav00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     D3880_01630 (ligB)    03410 Base excision repair     D3880_01630 (ligB)    03420 Nucleotide excision repair     D3880_01630 (ligB)    03430 Mismatch repair     D3880_01630 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pcav03032]     D3880_01630 (ligB)    03400 DNA repair and recombination proteins [BR:pcav03400]     D3880_01630 (ligB) Enzymes [BR:pcav01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      D3880_01630 (ligB) DNA replication proteins [BR:pcav03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      D3880_01630 (ligB) DNA repair and recombination proteins [BR:pcav03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      D3880_01630 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      D3880_01630 (ligB)    MMR (mismatch excision repair)     DNA ligase      D3880_01630 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       D3880_01630 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_DNA_ligase DNA_ligase_aden HHH_5 HHH HHH_2 RNA_ligase DUF3701 Motif Other DBs NCBI-ProteinID:  AYC31163 UniProt:  A0A385Z000 LinkDB All DBs Position complement(352948..354603) Genome browser AA seq 551 aa AA seqDB search MKRRIALCLALCPLVSHADTCPAWPAARATQELTVLSAQIAAWDDAYHRLGQSLVADELY DQARARLEAWNRCFPAAAPTASPALPSAGGPVRHPVAQTGLGKLADTAAVQAWMAPRSDL WIQPKVDGAAVTLVRQAISRGDGRHGQDWTAQARQIAAIPQRLSATDPLILQGELYWLLP DHVQAKAGSRGARGQVAGLLARQHLSPSEATQIGLFVWDWPNGPASMSARLAGLSALGFA DTARFSQPLHSVEEAQRWREHWYRSALPFASDGVVLRQSQRPAAARWQAAPPAWAVAWKH PLAQTLAQVRSVQFNIGRSGRITPVLNLVPVRLDDRNVRRVSLGSLRRWQALDIRPGDQV AIALAGLTIPRLDSVVWRAAERPQLQAPTAADYHALSCWQPTPGCTGQFRARLAWLSGKQ GLALPGVGPGTWEKLLQAQRLDGLLDWLNLSEAQLRETPGLGVRSAAALTQSFAQARQRS FTTWLRALGMPPIDASALPANWDALAQHTAEQWRSASGVGPARAQQLRAFFQHPEVLALR KQLQAAAVPGF NT seq 1656 nt NT seq  +upstreamnt  +downstreamnt atgaaacgccggatcgcgttatgcctcgccctatgtccactggttagccacgccgacacc tgccccgcctggccagccgcccgcgcgactcaggagctgaccgtcctcagcgcgcaaatc gccgcgtgggacgatgcctaccatcgtctcggccagtcgctggtcgccgacgagctgtat gaccaggcccgcgcccgcctggaagcatggaaccgctgctttcctgccgccgctccgacg gcatcgccggcactacccagcgccggagggccggtacgccatccggtggcgcagaccggg ctgggcaaactcgccgataccgccgccgtgcaagcctggatggcgccgcgcagcgaccta tggattcagcccaaggtcgatggcgcggcggtcaccctggtccgccaggcgatcagccgc ggcgacggccgccacggccaggactggacggcccaggcccggcagatcgccgccatcccg caacggctgagcgcgacggacccgctgatcctgcaaggcgagctgtactggcttctgccc gaccacgtgcaagccaaagccggcagccgcggcgcgcgcggccaggtcgccgggctgctc gcccgtcagcacctgagcccgagcgaggccacgcagatcggcctgttcgtctgggattgg ccgaatggcccggcgagcatgagtgcccgcctcgccggcctgagcgccctaggctttgcc gatacggcgcgcttcagtcagccgctgcacagcgtcgaggaggcgcagcgttggcgcgag cattggtatcgcagcgccctgcccttcgccagtgatggcgtggtgctgcgccagagccag cgaccggcagctgcacgctggcaggccgcgccaccggcctgggccgtggcgtggaaacac ccgctcgcccagaccctcgcgcaggtgcgcagcgtgcagttcaacatcggccgcagcggg cgcatcactccggtgctgaatctggtgccggtgcgcctcgacgaccgcaacgtccgccgg gtcagcctcggctcactgcgccgctggcaagcgctggacatccgccccggcgaccaggtc gccatcgccctcgccgggctgaccattccgcggctggacagcgtggtctggcgcgccgcc gaacgcccgcagttgcaagcaccgaccgccgcggattatcatgccttgagctgctggcag ccgacgccgggctgcaccggccagttccgtgcccgcctcgcctggctcagcggcaagcag ggtctggcgctacctggggtcggcccgggcacctgggaaaaattgctgcaggcgcaacgc ctggatggcttgctcgactggctgaatctatctgaagcgcaactgcgcgaaactcccggc ctcggcgtgcggagtgccgcggcgctgacccagagctttgcccaggcccgccagcgctcc ttcaccacctggctgcgcgccctcggcatgccgcccatcgatgcgtcggcgctacccgcc aactgggacgctctggcccagcacacggccgaacaatggcggagcgcgtcgggcgtcggc ccggcacgagcgcaacagttgcgggcattcttccagcatcccgaggtgctcgctctacgc aagcaattgcaggcggcagcagtgcccggtttctaa

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