Pseudomonas carboxydohydrogena: AFIC_000977
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Entry
AFIC_000977 CDS
T08963
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcax
Pseudomonas carboxydohydrogena
Pathway
pcax03030
DNA replication
pcax03410
Base excision repair
pcax03420
Nucleotide excision repair
pcax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFIC_000977 (ligA)
03410 Base excision repair
AFIC_000977 (ligA)
03420 Nucleotide excision repair
AFIC_000977 (ligA)
03430 Mismatch repair
AFIC_000977 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcax03032
]
AFIC_000977 (ligA)
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_000977 (ligA)
Enzymes [BR:
pcax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AFIC_000977 (ligA)
DNA replication proteins [BR:
pcax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AFIC_000977 (ligA)
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AFIC_000977 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFIC_000977 (ligA)
MMR (mismatch excision repair)
DNA ligase
AFIC_000977 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AFIC_000977 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WEF52488
LinkDB
All DBs
Position
1027644..1029764
Genome browser
AA seq
706 aa
AA seq
DB search
MAAKAKKTATPVENLTKAQAKIELTRLALEISMHDERYYQKDAPTVSDADYDKLRQRLNA
IEERFPELVAKDSPSQTVGAQPSRAFAKIRHAVPMLSLGNAFSDEDVAEFATRVRRFLNL
TTDEPLAIVAEPKIDGLSLSLRYENGELVSAATRGDGFEGEDVTANVRTIKDVPHKLKGK
GVPAICEVRGEVYMMREDFLALNKKQAEADDTIFANPRNSAAGSLRQKNVAVTASRPLKF
FAYAWGEMSEMPAATQYEMVTWFGKAGFVTNPRMVLCRDVEALLAYYREIETERAALPYD
IDGVVYKVDRLDWQQRLGFISRSPRWAIAHKFAAEQATTVLEKIGIQVGRTGALTPVARL
TPVTVGGVVVQNATLHNEDEIARKDIREGDTVVIQRAGDVIPQVVSVVTEKRPTNAKPYS
FPHKCPICGSHAVREEGEVVRRCTGALVCPAQAVEGLKHFVSRLAFDIEGLGDKQIQEFY
DEGVIMHPVDIFTLQKRDARASRKLKDREGYGDVSVNNLFAAIDARRRIELNRLIFALGI
RHVGEGNAKLLARHYGTIENLRAAMAEAAAAQTEEGNTSEAYADLNNIGGIGDIVADAVV
EFFAEKRNVKALDELLAEIEVLPAEQARTDSAVAGKTVVFTGSLTKFTRDEAKAQAERLG
AKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEWLNLIEA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaagcaaaaaaaacggcgacgccggtcgaaaatctcaccaaggcgcaggcc
aagatagaactaacgcgccttgcgcttgaaatctcgatgcatgacgagcgctattatcag
aaagacgcgccgacggtatccgacgcggactacgacaaactgcgccagcgtctcaacgcc
atcgaggagcgttttcccgaactggtggcgaaggattcgccgtcgcagacagtcggcgcg
cagccttcgcgcgcgttcgcgaaaatccgccatgccgtgccgatgctctcgctcggcaac
gcgttcagcgatgaggacgtcgcggaattcgccacgcgggtgcgccgttttctcaatctg
acaaccgacgagccgctggcgattgttgccgagccgaagatcgacgggctctcgttgtca
ttgcgctacgagaatggcgagcttgtcagcgccgcgacacgcggcgacggtttcgagggc
gaggacgtcaccgccaacgtccgcaccatcaaggacgtgccgcacaagttgaaggggaag
ggcgttcctgccatctgcgaggtgcgcggcgaggtttacatgatgcgcgaggattttctc
gcgctgaacaagaagcaggctgaggcggatgacaccatcttcgccaatccgcgcaattcc
gctgccggctcgctgcggcagaagaacgtcgccgtcaccgcatcgcgcccgctgaaattc
ttcgcctatgcctggggcgagatgagcgagatgcctgcggctacgcagtacgagatggtg
acgtggtttggcaaagcaggctttgtcaccaacccgcgcatggtgttgtgtcgtgatgtc
gaggcgctgctcgcatattatcgcgagatcgagaccgaacgcgcggctctgccttatgac
atcgatggcgtggtttacaaggtcgatcgtctcgactggcagcaacggctcggattcatc
tcgcgcagcccgcgctgggcgatcgcgcacaaattcgcggccgagcaggcgaccaccgtg
ctggagaagatcggcatccaggtcggtcgcaccggcgcgctgacgccggtggcacggctc
acgcccgtcacggtcggcggcgttgtggtgcagaacgccacgctgcataacgaggacgag
atcgcgcgcaaggacatccgcgagggcgacactgtggtgatccagcgcgcgggtgacgtg
atcccgcaggtcgtcagcgtggtgacggagaagcggccaacaaacgcgaagccttattcg
ttcccgcacaagtgcccgatctgcggcagccatgcggtgcgcgaggaaggagaggtcgtg
cgccgctgcaccggcgcgctggtgtgtcccgcgcaggcggtggagggattgaagcacttc
gtctcgcggctcgccttcgatatcgagggccttggcgacaagcagattcaggaattctac
gacgagggggtcatcatgcatcccgtcgatattttcacgctgcaaaagcgtgatgcgcgc
gcgtccaggaagctcaaggatcgcgaagggtacggcgatgtgtcggtgaataatctgttc
gccgcgatcgacgcgcggcgccggatcgaactcaatcgcctgatcttcgcgctcggcatc
cgccatgtcggtgaaggcaacgccaagttgctggcgcgccactacggcaccatcgagaat
ctgcgcgcggcgatggcggaagccgctgcggcgcagacggaggaaggcaacacgtccgag
gcctatgccgacctcaacaatatcggcggcatcggggacatcgtggctgacgcggtggtc
gaatttttcgcggagaagcgtaacgtcaaggcgctcgacgaattgctcgccgaaatcgaa
gtactgcccgccgagcaggcgcgcaccgattccgcggtggccgggaagacggtggtgttc
accggctcgttgacgaagtttacccgcgacgaggccaaggcgcaggccgagcggctgggc
gcgaaagtgtccggctcggtgtcgaagaaaaccgactatgtcgtcgcgggcgaggaggct
ggctccaaactcaccaaggcgcgcgaactcggtgtcgcggtgctcacggaagatgagtgg
ctgaatctcatcgaggcttga
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integrated database retrieval system
