Afipia carboxydohydrogena: AFIC_001869
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Entry
AFIC_001869 CDS
T08963
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
pcax
Afipia carboxydohydrogena
Pathway
pcax01501
beta-Lactam resistance
pcax01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
AFIC_001869
01503 Cationic antimicrobial peptide (CAMP) resistance
AFIC_001869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcax03036
]
AFIC_001869
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcax02000
]
AFIC_001869
01504 Antimicrobial resistance genes [BR:
pcax01504
]
AFIC_001869
Chromosome and associated proteins [BR:
pcax03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
AFIC_001869
Transporters [BR:
pcax02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
AFIC_001869
Antimicrobial resistance genes [BR:
pcax01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
AFIC_001869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSH_RND
Beta-barrel_RND_2
HH_MFP_RND
YknX_C
BSH_CzcB
BSH_CusB
RND-MFP_C
BSH_YhbJ
BSH_Fcp1
Biotin_lipoyl
CzcB_C
HH_YBHG
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
WEF50333
UniProt:
A0ABY8BJZ9
LinkDB
All DBs
Position
complement(1935247..1936425)
Genome browser
AA seq
392 aa
AA seq
DB search
MPSEPRVQISQRKLRLAGIAAGAVIVVAVVTGIVLRENGNARLREWTDAQAIPTVAVSKP
GVKAPSANLTLPGRLEAYYRAPIYARVSGYLKDWKVDIGARVKAGQLLAEIDAPDLDQQL
LQARADLANAEAASKLSAATLKRRRALLASNFVSLQEIDERTADLSSKDAQVKAMQANVD
RLQALAGYKRVEAPFDGVVTERNTDVGALINGGTGTGAAMFVVSDIKKLRVYVNVPQSYL
ASVKVGGAASISVPEYVGRSFPAVVESSSQAVDVGSGTSRMQLTLDNASGELRPGSYADV
TLNLTSENNLLTVPSSALIFNRDGLSVATVDGDDRLRFKKVTIARDLGREIEIATGLAAQ
DRIVVTPADGVVDGDRVRIAGKQPGEKTSSAQ
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctgaaccgcgcgtccagatttcacagcgcaagctgcgcctcgcgggaattgcc
gccggtgccgtgatcgtggtggccgtggtgacgggaatcgtgctgcgcgagaacggcaat
gcgcggttgcgcgagtggaccgatgcgcaggcgatcccgaccgttgccgtctccaaaccc
ggcgtcaaggcgccgagcgcgaatctgaccttgccgggccgtctcgaagcctattaccgc
gcgccgatctatgcgcgcgtcagcggctacctgaaagactggaaggtcgatatcggcgcc
agggtgaaggccggtcaactgctcgcggagatcgatgcgccggatctcgaccagcaattg
ctgcaagcccgcgccgacctcgccaacgcggaggccgcctcgaaactctccgccgccacg
ctgaagcgccgccgggcgctgctcgcgtccaacttcgtgtcgttgcaggagatcgacgag
cgcaccgccgatctgtccagcaaggatgcccaggtcaaggcgatgcaggcgaatgtcgac
cggttgcaggcgctggcaggatacaagcgtgtcgaggcgccgttcgacggtgtcgtgacc
gagcgcaacaccgacgtcggcgcgctgatcaatggcggcaccggcacgggtgccgcgatg
ttcgtcgtctccgacatcaagaagctgcgcgtctacgtcaacgtgccgcaaagctacctc
gcgtccgtcaaggtcggcggcgcggcgtcgatctcggtgccggaatatgtcgggcgttcg
ttcccggcggttgttgaatcgtcctcacaggcggtcgatgtgggctccggcacctcacgg
atgcagttgacgctcgacaatgccagcggcgaattgcggcccggctcctatgccgatgtg
acgctgaacctgacgagcgagaacaatctgctgacggtcccgtccagcgccctcattttc
aaccgggacggcttgagcgtggcgacggtcgatggcgatgatcgccttcgtttcaagaag
gtgacgatagcccgcgatctgggccgcgagatcgagatcgcgaccgggcttgcggcgcag
gatcggatcgtggtgacgcccgccgatggcgtggtcgatggcgatcgcgtccggatcgcc
ggcaagcagccgggcgagaagacctccagcgcccaatag
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