Persicimonas caeni: FRD00_12765
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Entry
FRD00_12765 CDS
T06769
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcay
Persicimonas caeni
Pathway
pcay03030
DNA replication
pcay03410
Base excision repair
pcay03420
Nucleotide excision repair
pcay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRD00_12765 (ligA)
03410 Base excision repair
FRD00_12765 (ligA)
03420 Nucleotide excision repair
FRD00_12765 (ligA)
03430 Mismatch repair
FRD00_12765 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcay03032
]
FRD00_12765 (ligA)
03400 DNA repair and recombination proteins [BR:
pcay03400
]
FRD00_12765 (ligA)
Enzymes [BR:
pcay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRD00_12765 (ligA)
DNA replication proteins [BR:
pcay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRD00_12765 (ligA)
DNA repair and recombination proteins [BR:
pcay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRD00_12765 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRD00_12765 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRD00_12765 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRD00_12765 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QED32808
LinkDB
All DBs
Position
complement(3445865..3447952)
Genome browser
AA seq
695 aa
AA seq
DB search
MMNADNPFVRDPQLDFDDVDTLSDDQAREQVERLREALDFHDYRYYVQNDPVIADRAYDQ
LFRRLEALEEAFPELQSPNSPTRRVGAEPLDSLERVEHVAPMLSLNAEFEADNVAGFDKF
IRDNLDGGEFTYVCEPKFDGLSVEILYENGELTRASTRGNGEEGELVTDNVRTIHAVPLR
LQGDDYPDFLAVRGEVLMPKSGFQELNKRRIERGDDPFANPRNAAAGTVRLLDPSQVAQR
PLDIFFYDVMDASAPVAETECRVLDRFPRWGLKIDEHSRRCETLEEVEAFYASLEEVRDE
LDYEIDGMVIKVNEFAHRERLGVRSRSPRWALAWKFTPKKEITTLEQIVVQVGRTGKLTP
VALLDPVDVGGVTVSRATLHNIEEVHAKDVRVGDTVRIQRAGDVIPEVVERIDTANEKGG
EDERGEPFEMPEHCPSCGAEVVREGPNHFCPNGMSCPAQLRGRIQHFAARNAMDIEGLGE
ETVEQLVSREMVRSIPDLYELDVDAIAGLERFADKSARKLYDNIQGSKKVRLHRFLFALG
IPMVGQHTARLLAEAFGSLDALRDADEEALLEVSGVGSEIAGSVVDFFDEEQNERALERL
FDMGLELEEPPSAGGEAERPLEGKKFVFTGSLADFTRSEAKRRVEDLGARATSSVSGETD
YVVVGDNPGSKLDQARELGVEILDEEAFGELLSGL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatgccgacaatccctttgtcagagatccgcagctcgacttcgacgacgtcgac
accttgagcgacgaccaagccagagagcaggtcgagaggcttcgcgaggcgctcgacttc
cacgattaccgctactacgtccaaaacgacccggtgatcgccgatcgcgcctacgaccag
ctcttccgtcggctcgaagcgctcgaggaggccttccccgagctgcagtcgccgaattcg
cccacccgccgcgtcggcgccgagccgctcgactcgctcgagcgtgtcgagcacgtcgcc
ccgatgctcagcctcaacgccgagttcgaggccgacaacgtcgccgggttcgacaagttc
atccgcgacaacctcgacggcggcgagtttacctacgtgtgcgagcccaaattcgacggc
ctctccgtcgagattctctatgaaaatggcgagcttacccgcgcctctacccgcggcaac
ggcgaagaaggcgagctcgtcaccgacaacgtgcgcaccatccacgcggtgcccctgcgg
ctgcagggcgacgattatcccgactttttggcggtgcgcggcgaggtgctcatgcccaag
tcgggcttccaggagctcaacaagcggcgcatcgagcgcggcgacgacccgttcgccaac
ccgcgaaacgccgccgccggcaccgtgcgcctgctcgacccgtcgcaggtcgcccagcgt
ccgctcgacatcttcttttacgacgtgatggacgcctccgcgccggtcgccgagaccgag
tgccgcgtgctcgaccgctttcccaggtggggcctcaagatcgacgagcacagccgccgc
tgcgagaccctcgaggaggtcgaggcgttctacgccagcctcgaggaggtgcgcgacgag
ctcgactacgagatcgacgggatggtcatcaaggtcaacgagttcgcccaccgtgagcgc
ctgggcgtgcgctcgcgcagccccaggtgggcgctggcgtggaagttcacgcccaaaaag
gagatcaccaccctcgagcagatcgtcgtgcaggtcggccgcaccggcaagctcaccccc
gtggcgctgctcgacccggtcgacgtgggcggggtgaccgtcagccgggcgaccttgcac
aatatcgaggaggtccacgccaaagacgtgcgcgtgggcgacaccgtgcgcatccagcgc
gccggcgacgtgatcccggaggtcgtcgagcgaattgatacagccaacgagaagggcggc
gaggacgagcgcggcgagcccttcgagatgcccgagcactgcccgagctgcggcgccgag
gtcgtgcgcgaggggcccaatcacttctgccccaacggcatgagctgcccggcgcagcta
cgcgggcgcatccagcacttcgccgcgcgcaacgccatggacatcgagggcctgggcgaa
gagaccgtcgagcagctcgtctcgcgcgagatggtccgctccatccccgacctgtacgaa
ctcgacgtcgacgctatcgccggcctcgagcgcttcgccgacaagtctgcccgaaagctc
tacgacaatatccagggctccaaaaaggtccgcctccatcgctttttgttcgccctcggc
atccccatggtcggccagcataccgctcgcctcttagccgaggcgttcggctcgctcgac
gcccttcgtgatgcggacgaagaggcgttgttggaggtgtcgggtgtgggctcggagatc
gccggcagcgtggtcgacttcttcgacgaggagcaaaacgagcgcgccctcgagcgcctc
ttcgacatgggcttggagctcgaagagccaccgtcggcaggcggcgaagcagagcgcccg
ctcgagggcaagaagttcgtctttacggggagcctcgccgacttcacgcgcagcgaggcg
aagcggcgcgtcgaagatctcggcgcgcgcgccacctccagcgtcagcggagagaccgat
tatgtggtcgtgggtgacaacccgggcagcaagctcgaccaggcgcgggaactcggcgtc
gagatcttggacgaagaggcgttcggcgagctcttgtcgggtctctag
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