Piscinibacterium candidicorallinum: ACMDW7_08835
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Entry
ACMDW7_08835 CDS
T10926
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcaz Piscinibacterium candidicorallinum
Pathway
pcaz03030
DNA replication
pcaz03410
Base excision repair
pcaz03420
Nucleotide excision repair
pcaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACMDW7_08835 (ligA)
03410 Base excision repair
ACMDW7_08835 (ligA)
03420 Nucleotide excision repair
ACMDW7_08835 (ligA)
03430 Mismatch repair
ACMDW7_08835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcaz03032
]
ACMDW7_08835 (ligA)
03400 DNA repair and recombination proteins [BR:
pcaz03400
]
ACMDW7_08835 (ligA)
Enzymes [BR:
pcaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACMDW7_08835 (ligA)
DNA replication proteins [BR:
pcaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACMDW7_08835 (ligA)
DNA repair and recombination proteins [BR:
pcaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACMDW7_08835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACMDW7_08835 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACMDW7_08835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACMDW7_08835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
XOD95259
LinkDB
All DBs
Position
complement(1959979..1962087)
Genome browser
AA seq
702 aa
AA seq
DB search
MTSDLFTGAGLADAQAAARAQTLRAELHRYAHAYYVLDAPLVPDAEYDRLYQELEALESR
HPELRTPDSPTQRVIGAVLDGFAEVRHAVPMLSIRTETDTTAAGAQAFDARVRKELGLSV
EAAALAYAVELKFDGLAINLRYEHGVLVQAATRGDGEMGEDVTHNIRTIGQIPLRLIGNA
PEVLEVRGEVYIRRDDFETMNERQRAAGDKTFVNPRNAAAGAVRQLDSRIAAQRPLSFFA
YGLGEVRGWPLLEEAEATHSGVIDALAAFGLPVNADRDVVQGADGLVAFHARIAAARDGL
PFDIDGVVYKVNRLADQRRLGFVSREPRWAVAHKYPAQEQMTTVLDIDVQVGRTGKLTPV
AKLAPVFVGGVTVSNATLHNEDETRRKDVRVGDTVIVRRAGDVIPEVVDVVRERRPAELQ
SAEPFDLYKRLGGVCPVCGSHIAREEGEADWRCTGGLFCAAQRKQALLHYAQRRAMDIEG
LGDKIVEQLVDSQQVRTLADLYALRAEDLAALDRMGEKSAVKLVAAIAASKAPALNRFLF
GLGIRHVGEQTAKDLARHFGSLEAVMGATEEQFLQVPDVGPVVAQSLAAFFAEAHNREVI
AALLAAGLAPSHTAPAAAASSSGFAGKTFVLTGTLPSMSREDAQARIEAAGGKVSGSVSK
KTYAVVAGAEAGSKLTKAQELGIPVWDEAALVAALAQDAQGT
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgacctctgatctgtttaccggcgccggcctggccgacgcgcaggccgccgcgcgcgcg
cagacgctgcgtgccgagctgcatcgctacgcgcatgcctactacgtgctggatgcaccg
ctcgtgcccgatgccgagtacgaccggctgtatcaggagctggaagcgctggagagtcgc
caccccgagctgcgtacgccggattcacccacgcaacgggtgattggcgcggtgctggac
ggttttgcggaggtacgccacgccgtgcccatgctctcgatacgcaccgagacggacacc
actgcggcgggcgcacaggccttcgatgcgcgggttcgcaaggaattgggcttgtctgtc
gaggcagccgccctggcctatgcggtggagctgaagttcgacggtctggccatcaatctg
cgctacgagcacggcgtgctggtacaggccgctacgcggggtgacggcgagatgggcgag
gacgtcacgcacaacatccgaaccatcggccagattccgctgcgcctgatcggcaacgcc
cctgaggtgcttgaagtgcgtggcgaggtctacatccgtcgcgacgacttcgagaccatg
aacgaacgccagcgcgctgcaggcgacaagaccttcgtcaatcctcgcaatgcggcggcg
ggtgcggttcggcagctggactcccggattgcggcgcagcggccactgtccttctttgcc
tatggcctgggcgaggtccgcggctggcccctgctggaagaggccgaagccacacactcc
ggcgtcatcgatgcgctggctgcgttcggcctgccggtgaacgcggatcgcgatgtggtg
cagggtgccgacgggctggtggcgttccatgcgcgtattgccgcggcgcgtgatggattg
cccttcgacattgacggcgtggtctacaaggtcaaccgcctggcggatcagcggcgtctg
ggcttcgtgagccgggaaccgcgttgggccgtggcgcacaagtacccggctcaggagcag
atgaccacggtgctggacattgacgtgcaggtcggccgcaccggcaagctcacgcccgtg
gccaagctggcgccagtgttcgtcggtggtgtcaccgtcagcaatgcgaccttgcacaac
gaggacgaaacccgccgcaaggacgtgcgcgtgggcgacaccgtgatcgtccggcgcgca
ggcgacgtgattcccgaagtggtggatgtggtgcgcgagcgtcgccccgcagagttgcaa
agcgccgagcccttcgatctgtacaagcgcctgggcggggtctgcccggtttgtggcagc
cacatcgcccgggaggagggcgaggcagactggcgctgcaccgggggcctgttctgtgct
gcgcagcgcaagcaggcgctcttgcactacgcccagcgccgcgccatggatatcgaaggc
ctgggcgacaagatcgtcgagcagttggtggacagccagcaggtgcgcacattggcggac
ctctatgcactgagggccgaagatcttgcggcgctggatcgcatgggtgagaagagcgcg
gtgaaactggttgccgccatcgcggcctccaaggcgccggcgctgaaccgctttctgttt
ggtctgggcatccgccatgtgggcgagcagaccgccaaggatcttgcgcggcacttcggc
tcgcttgaggccgtgatgggagccacggaagagcagtttctgcaggtgcctgatgtcggc
ccggtggtggcgcaaagccttgctgccttctttgccgaggcccacaaccgcgaggtgatc
gccgcacttctggcagcggggcttgcgccttcgcacactgcgccggccgcggcagccagc
agcagcggctttgccggaaagaccttcgtgctcaccggcacccttcccagcatgagccgc
gaggatgcgcaggcgcgcatcgaggctgcgggcggcaaggtcagcgggtcggtgtccaag
aaaacctatgccgttgtggctggggccgaggccggcagcaagctcaccaaggcgcaggag
ctgggcattcccgtttgggacgaagcagcgctggtcgccgcgctcgcgcaggacgcgcaa
ggcacatga
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