Plasmodium chabaudi: PCHAS_1011700
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Entry
PCHAS_1011700 CDS
T01108
Name
(RefSeq) CCR4-associated factor 16, putative
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCHAS_1011700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_1011700
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PCHAS_1011700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
NACHT
AAA_21
AAA_29
RsgA_GTPase
AAA_15
AAA_23
Arf
Septin
AAA_18
MMR_HSR1
AAA_7
Sigma54_activat
Dynamin_N
ATP-synt_ab
nSTAND3
AAA_25
Zeta_toxin
AAA_28
ANT
AAA_22
Motif
Other DBs
NCBI-GeneID:
3491524
NCBI-ProteinID:
XP_016655532
UniProt:
A0A077YEK2
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All DBs
Position
10:483983..485424
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AA seq
257 aa
AA seq
DB search
MDSIVINNLIYNYYHPLRKTRIQALNDINLVFERGMRVLICGKNGAGKSTLLSILAGKKL
VKEESVSAFNKPVFHDLSLNDRIGYVGEWWNDEYAMNITIKNMFAQYADSKRYKKLMKLF
DIDDSKVISGISKGQKKKVQIVSTIMKRKDIYIFDEAAESLDLISRKVLLDFLKNESIKY
KCIIIYSTHIFDCMDKWSTHVLYLAKGSVSFFSDINSIVSDKKYVSMADFVFDNMMEETN
KNDKSYNIDEIMNLDSD
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggatagcatcgtaattaacaacttaatttataattactatcacccactacgaaaaact
cgaattcaggccctaaacgatataaaccttgtatttgaaaggggtatgcgagttcttatt
tgtggaaaaaatggagccggaaagagtaccttactaagcattctagctggaaaaaagctt
gtaaaagaagaatctgtttccgcttttaacaaaccagtttttcacgacctttctttaaac
gatagaataggatatgttggagaatggtggaatgatgaatacgccatgaatatcacaata
aaaaacatgtttgctcaatatgctgattcgaagagatataaaaagttaatgaaattgttt
gacatagatgatagtaaagttatatctggaatttctaagggacagaaaaaaaaagttcaa
attgtatctactataatgaaaagaaaagatatttatatttttgatgaagcagcagaatcc
ttagatttaatatctagaaaagttttacttgattttttgaaaaatgaatcgattaaatat
aagtgtattataatttattcaacccacatatttgattgtatggacaaatggtctacccat
gttttatatttggcaaaaggctcagtatcctttttttcagatataaacagtattgtaagt
gataagaaatacgtttcaatggccgactttgtttttgacaatatgatggaagagacaaac
aaaaatgataaatcttacaatattgatgaaattatgaatctagattctgattag
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