Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_000280
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Entry
PCC21_000280 CDS
T02320
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03030
DNA replication
pcc03410
Base excision repair
pcc03420
Nucleotide excision repair
pcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCC21_000280
03410 Base excision repair
PCC21_000280
03420 Nucleotide excision repair
PCC21_000280
03430 Mismatch repair
PCC21_000280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcc03032
]
PCC21_000280
03400 DNA repair and recombination proteins [BR:
pcc03400
]
PCC21_000280
Enzymes [BR:
pcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PCC21_000280
DNA replication proteins [BR:
pcc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PCC21_000280
DNA repair and recombination proteins [BR:
pcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PCC21_000280
NER (nucleotide excision repair)
GGR (global genome repair) factors
PCC21_000280
MMR (mismatch excision repair)
DNA ligase
PCC21_000280
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PCC21_000280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFR01431
LinkDB
All DBs
Position
29661..31352
Genome browser
AA seq
563 aa
AA seq
DB search
MWLRIHTFLIIIVMGGISNFPAMAAVCPDWDSTRSGKEIDALRHQLEQWDDVYYTEGKSP
IEDDVYDQLRDQLNQWLGCFQPQNAIPARLPDNGKQPHPVAHTGLKKLSDRRQLVQWIAS
REDLWIQPKVDGVAVTLAYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTDAPSSL
VLQGELFLKMTDHRQRTQGGVNARSVVAGEMRRHQPSPVLSQIGLFVWEWPDGPKTMPER
LEKLKEMGFVMTADYTHAIGSFADAEKWRHHWYNSTQPFVTDGVVIRQTKEPQGRYWRNT
SADWAIAWKYPPVHQVAEVADVTFSVGRTGKVAVVLKLNPLKLDDKSVSRVNVGSLSRWK
QWDVLPGDRVSVSLAGQGIPRLDNVVWRGTERPAIVSPNEHDFHAFSCFRYSAACQQQFL
ARLVWLSGEHGLNLAGVREGMWLRLIQHDLLEDVLSWLSLTEAQLNAVNGMGDKRARDIY
TSLQSARQMPLSRWLLALGIPVPRSASSALDNVGWLALQQWTAQQWRQFSGIGERRAEEI
MAFLKHPIVVELIARLGREGVHR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtggctcaggattcatacatttttaatcatcatcgttatggggggcatcagcaatttc
cctgccatggctgcggtgtgccccgattgggatagcacgcgttccggcaaggaaattgat
gcattgcgtcaccagctagagcagtgggatgacgtgtattacaccgaagggaaaagcccg
atagaagatgacgtttacgatcaactgcgggaccagttaaaccagtggttaggctgtttt
cagcctcaaaacgctattcctgctcggttgcccgataatggcaagcagcctcaccccgtt
gcccatacgggactgaaaaaattgtccgatcgtcgacaactggtgcaatggatcgcatcg
cgtgaggatttatggattcagccaaaagttgatggtgtggctgttacgttggcctatcag
cacggtaagctcgtgtctgcggttagccggggtaacggcctgcaaggtgaagactggacg
gagaaagtgcgcctgattccgggaattcctcatttattaaccgatgcgccttcctcattg
gtactacaaggggagcttttcctgaagatgaccgatcatcgacagcgtacccagggcggc
gttaatgcccgctcggtcgtggccggtgaaatgcgtcgtcatcagccatctcccgtgttg
tcgcagattggtctgtttgtctgggaatggccggatggcccaaagacgatgcccgagcgt
ctggagaaattgaaggaaatggggtttgtgatgacggcggactatacccatgccattggg
tcattcgccgacgcggagaaatggcgtcatcactggtataacagtacgcagcccttcgtg
acggatggcgtggtgattcgccagactaaagagccgcaggggcgctattggcgtaataca
tcagccgactgggcgatcgcatggaaatacccacctgttcatcaggttgcggaagtggct
gatgtgacattttctgtcgggcggacgggtaaagtcgccgtagtactgaagcttaatcct
ttgaaattggatgacaaatcggtcagccgggtgaatgtgggctcgctgtcgcgttggaaa
cagtgggatgtgttgcccggcgatcgggtgagtgtcagtctggcagggcaggggattcca
cgtctggataatgtggtatggcgtggcactgagcggcctgccatcgtttcccctaatgaa
catgatttccatgcttttagctgttttcggtatagcgcggcttgtcagcagcaatttttg
gcgcgcttagtctggttgagtggagaacatggtttaaatctggcaggagtgcgtgaaggg
atgtggctgcgcctgatacaacatgatttactggaggatgtgctgtcatggctatctctg
acggaggcacagcttaatgcggtcaatggcatgggcgataagcgggcgcgggatatttat
acaagcttgcagtctgcacggcagatgccactatcccgctggctgcttgcgctgggtatt
cctgtgcctcgttccgccagtagcgcattggataatgtgggttggctggcgttacagcaa
tggacagcgcaacagtggcgacagttctctggtattggggagcgacgcgcggaagagatt
atggcgttcctgaagcaccctatcgtggtggaattaattgcccgattaggtcgtgaaggc
gtacatagataa
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