Mixta calida: C2E16_15085
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Entry
C2E16_15085 CDS
T05419
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcd
Mixta calida
Pathway
pcd03030
DNA replication
pcd03410
Base excision repair
pcd03420
Nucleotide excision repair
pcd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2E16_15085 (ligA)
03410 Base excision repair
C2E16_15085 (ligA)
03420 Nucleotide excision repair
C2E16_15085 (ligA)
03430 Mismatch repair
C2E16_15085 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcd03032
]
C2E16_15085 (ligA)
03400 DNA repair and recombination proteins [BR:
pcd03400
]
C2E16_15085 (ligA)
Enzymes [BR:
pcd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C2E16_15085 (ligA)
DNA replication proteins [BR:
pcd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C2E16_15085 (ligA)
DNA repair and recombination proteins [BR:
pcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C2E16_15085 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2E16_15085 (ligA)
MMR (mismatch excision repair)
DNA ligase
C2E16_15085 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2E16_15085 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AUY26094
UniProt:
A0ABM6S346
LinkDB
All DBs
Position
complement(3166676..3168703)
Genome browser
AA seq
675 aa
AA seq
DB search
MESVQDKITELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEEQHPDLITPDSPTQ
RVGAAPLTAFEQVRHEVPMLSLDNVFDEAGYLAFNKRVQDRLKSSDEITFCCELKLDGLA
VSLLYEDGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVFMNQAG
FEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGFGLVEGGELPHSHW
ERLQQFKAWGIPVSDRIRLSHSAEEVLAFYHQVERDRPQLGFDIDGVVIKVDSQALQDRL
GFVARAPRWAIAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEIARLGLRIGDRVVIRRAGDVIPQVVNVVETERGSDTREVVFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKIIDQLVEKEYVKTPADLFRLSAG
LLTGLDRMGPKSAQNVVDALNKAKATTLPRFLYALGIREVGEATAVNLANHFGSLEKIMD
ADLDALIAVPDVGKVVAAHVRNFMEEESNREVIRQLVEDIGIHWPAVTVINAEELDSPFA
GKTVVLTGSLSIMSRDDAKERLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLDNPHG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgtacaagacaaaatcaccgagttgcgaaccacgcttcgtcatcatgaatat
ttgtatcacgtcatggacgcgccggaaattcccgacgcggagtacgatcgcctgatgcgc
gaactgcgtgcgctggaagaacagcatcccgacctgattacgcccgattcgccgacgcag
cgcgtgggcgcggcgccgctgacggcgtttgagcaggtgcgtcatgaagtgcctatgctg
tcgctggataacgttttcgacgaggcgggctatctcgccttcaacaagcgcgttcaggat
cgcctgaaaagcagcgatgagatcaccttctgctgcgaactgaagctggacggcctggcc
gtcagcctgctctatgaagatggcctgttggtacgcgccgccacgcgcggcgacggcacg
accggcgaaaacattaccgccaatgtgcgcaccattcgcgccattccgctgcgtctgaag
ggcgataacattccggcgcggctggaagtgcgcggcgaagtgtttatgaatcaggcaggc
tttgaaaagctgaatgaagaggcgcgccgcactggcggtaaagtgttcgccaacccgcgc
aacgccgccgccggttcgctgcgccagctcgatccgcgcgtcaccgccaaacgtccgctg
accttcttctgctacggttttgggctggtcgagggtggcgaattgccccacagccactgg
gaacgtctgcaacagtttaaagcctgggggattccggtcagcgatcgcattcgcctcagc
cacagcgcggaagaggtgctggcgttttatcatcaggtagagcgtgacaggccgcagctc
ggcttcgatatcgacggcgtagtgatcaaagtcgattcgcaggcgttgcaggatcggctg
ggcttcgtcgcacgcgcgccgcgctgggcgattgcctttaaattcccggcgcaggagcag
ctgacgaccgtgcgcgacgtggagtttcaggtcggacgcaccggcgctattacgccggtc
gcgcgtctggagccggttcaggtcgcgggcgtgatggtcagcaacgccacgctgcacaac
gccgacgaaatcgcgcgtctcggcctgcgtattggcgatcgcgtcgttattcgccgggcg
ggcgatgttatcccgcaggtggtgaacgttgtcgaaaccgaacgcggcagcgatacgcgg
gaagtggtgtttcctgcccattgtccggtctgcggctcggatgtcgagcgtgtggaaggc
gaggcggtcacgcgctgtaccggcggcctgatctgcggcgcccagcgtaaagaggcgttg
aagcatttcgtttcgcggcgcgcgatggacgtcgaaggcatgggcgataagatcatcgac
cagctggtggaaaaagagtatgtcaaaacccctgccgatctgttccgtctgagcgccggg
ctgctgaccggcctggatcgcatggggccgaaatcggcgcagaacgtcgtggatgcacta
aataaagcgaaggcgacaacgctgccgcgcttcctctacgcgctgggtattcgcgaagtg
ggcgaggcgaccgccgttaatctggcgaaccattttggctcgctggagaagatcatggat
gccgatctggatgcgctgatcgcggtgccggatgtcggtaaagtggtggcggcgcacgtg
cgcaactttatggaagaagagagcaatcgcgaagttatccgccagctggtagaggatatc
ggcatccactggccggcggtgacggtcattaatgctgaggagctggacagcccgttcgcc
ggtaaaaccgtcgtgctgaccggctcgctgagcatcatgtcgcgcgacgacgccaaagag
cggctcacggcgctgggcgcgaaggtcagcggcagcgtatcgaagaaaactgacctcgtc
atcgctggcgaagcggcaggctccaagctggcgaaggcgcaggagctgggcattgaggtc
attgatgaggcggagatgatccgtttgctggataacccgcatggataa
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