Polaribacter cellanae: J3359_17065
Help
Entry
J3359_17065 CDS
T08224
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcea
Polaribacter cellanae
Pathway
pcea03030
DNA replication
pcea03410
Base excision repair
pcea03420
Nucleotide excision repair
pcea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J3359_17065 (ligA)
03410 Base excision repair
J3359_17065 (ligA)
03420 Nucleotide excision repair
J3359_17065 (ligA)
03430 Mismatch repair
J3359_17065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcea03032
]
J3359_17065 (ligA)
03400 DNA repair and recombination proteins [BR:
pcea03400
]
J3359_17065 (ligA)
Enzymes [BR:
pcea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J3359_17065 (ligA)
DNA replication proteins [BR:
pcea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J3359_17065 (ligA)
DNA repair and recombination proteins [BR:
pcea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J3359_17065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J3359_17065 (ligA)
MMR (mismatch excision repair)
DNA ligase
J3359_17065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J3359_17065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
5_3_exonuc
HHH_3
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QTE22487
UniProt:
A0A975H6J1
LinkDB
All DBs
Position
3873797..3875794
Genome browser
AA seq
665 aa
AA seq
DB search
MTVLERIQLLRDELNNHNYNYYVLDKATISDFEFDIKLKELEKLETENPEFFDANSPTQR
VGGTITKNFETVAHKNRMYSLDNSYSKEDLLDWEKRVQKGLGREDLEYTCELKFDGASIN
LTYENGKFIKAVTRGDGFQGDNVTANVKTIRSIPLSIKKDFASNFQMRGEIILPLDGFNK
MNKERVANGEEEYRNPRNTASGSLKLQDSVEVAKRPLDCLLYQVVTEERKYKTHFEILEN
ARKVGFKVPKTITLAKSIDEVFDFVNHWDKKRHDLPYETDGVVVKVNNLQQQEELGYTSK
APRWAIAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIE
KLDIREKDTVFVEKGGEIIPKIIGVDFTKRPIDSQPTIYATSCPECNTVLVRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKVGLIQNYADLYDLKVAQIIPL
ERMAEKSARNIIAGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMSATFEE
LMSVDEIGDRIAQSIVDFSNNLANIQLINRLKTVGVQLEVSAESLKNKTNKLGRQVFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGISIISEQEF
IDKIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacggttttagaaagaatacaattacttcgtgacgaattaaataatcacaactataat
tattacgtattagacaaggcaacaatttccgatttcgaatttgatataaaattaaaagaa
ttagaaaagttagaaacagaaaacccagagtttttcgatgcaaattcgccaacacaaaga
gtaggaggaaccatcaccaaaaattttgaaacagttgcacacaaaaatagaatgtattct
ttagataattcgtattcaaaagaagatttgttagattgggaaaaacgagttcaaaaaggt
ttaggaagagaagatttagaatatacttgtgaactaaaattcgatggtgcttccataaat
ttaacctacgaaaacggaaaatttataaaagcagttacaagaggagatggttttcaagga
gataatgttactgcaaacgtaaaaacaattcgttccatcccattatcgatcaaaaaagac
tttgcttccaattttcaaatgcgtggagaaattattttaccactagatggttttaataaa
atgaataaagaacgtgttgcaaatggcgaagaagaatatagaaaccccagaaataccgca
agcggaagtttaaaattgcaagacagtgtagaagttgcaaaaagacctttagattgttta
ttgtatcaagtggttacagaagaacgcaaatataaaacgcatttcgaaattttagagaat
gccagaaaagttggttttaaagttccaaaaacaatcactttggcaaaatcaatagacgag
gtttttgattttgtaaaccattgggacaaaaaacgccacgatttaccttacgaaacagat
ggagtagttgtaaaagtgaataatttacaacagcaagaagagttagggtacacctcaaaa
gcaccaagatgggcaatcgcatataagtttaaagcggaacaggtttctacagttttaaat
gaaattacatatcaagttggtagaacaggtgctattactcctgttgcaaatttagaaccg
gttcaattggcaggaactactgtaaaacgtgcttctttacacaatgcagatcagattgaa
aaattagatattcgagaaaaagacactgtttttgttgaaaaaggtggcgaaatcatacca
aaaattattggggtagattttacaaaacgaccaattgattctcagccaacaatatacgca
accagttgcccagaatgcaatacagtattggtaagaacagaaggcgatgcaaagcattat
tgcccgaatgaatttggttgcgctccacaaattacagggagaattcaacattttatcagt
agaaaagcgatggatattgatggtttaggaggtgaaactgtggacttgttaagaaaagtt
ggactcattcaaaattatgcagatttgtacgatttaaaagtagcccaaataattccgtta
gaaaggatggcagaaaaatctgcaagaaatatcattgcaggaatcgaaaaatcaaaagaa
attccgtttgaaaaagtattgtttgcactcggaattcgttttgttggagaaactgtcgct
aaaaaattagcaaagcattttaaatccatagataatttaatgtcggcaactttcgaagaa
ttaatgagtgtagacgaaataggagacagaattgcacaaagtattgtagatttttcaaac
aatttagcaaatattcaactaataaatcgtttaaaaacagtgggagttcaactagaggtt
tctgcagaaagtttaaaaaacaaaacaaataagttaggaagacaagtttttgtagtttca
ggcgttttccatcaaatgagcagaaacgaattaaaaaaagcaattgaagataatggaggg
aaagtaagctcatccatatctaaaaaaacaaactttatagttgcaggagataatatgggg
ccttcaaaacttacaaaagcgcaagatttaggaatttccataatttccgaacaagaattt
atagataaaattagttaa
DBGET
integrated database retrieval system
