Paenibacillus cellulosilyticus: HUB94_26655
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Entry
HUB94_26655 CDS
T07813
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcel
Paenibacillus cellulosilyticus
Pathway
pcel03030
DNA replication
pcel03410
Base excision repair
pcel03420
Nucleotide excision repair
pcel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUB94_26655 (ligA)
03410 Base excision repair
HUB94_26655 (ligA)
03420 Nucleotide excision repair
HUB94_26655 (ligA)
03430 Mismatch repair
HUB94_26655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcel03032
]
HUB94_26655 (ligA)
03400 DNA repair and recombination proteins [BR:
pcel03400
]
HUB94_26655 (ligA)
Enzymes [BR:
pcel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUB94_26655 (ligA)
DNA replication proteins [BR:
pcel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUB94_26655 (ligA)
DNA repair and recombination proteins [BR:
pcel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUB94_26655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUB94_26655 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUB94_26655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUB94_26655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QKS47882
LinkDB
All DBs
Position
unnamed4:complement(1669659..1671701)
Genome browser
AA seq
680 aa
AA seq
DB search
MDQYAGAAAPEQLERMKQLADEIARHSYNYYTLDNPTISDAEFDKLYDELTALEQSTGVV
LDHSPTQRVGGELLKGFDPHRHLSRLWSLDKAQNVEDLRAWNQRVTKAVSDWNTKNPGQP
PLPAPSYVIELKYDGLTLNLTYDGGRLVQASTRGNGVVGEGILAQVKTIRSVPLTIPFTE
GLIEVQGEGIMNLSVLEAYNRTAEDPLKNARNAAAGALRNQNPRITAERKLDAFFYNVGH
AQGVSFETHRQMQQFLIDNRFKVNPYVTYCDSIEEVEQEMTRITEMRPTLDYLIDGAVVK
LVDMRTREALGYTDKFPRWAVAFKFEAEETTTVLESVSWEVGRTGKITPVARVEAVELAG
VTVQNCTLNNIGDIERKNLKHALGTRVFIRRSNDVIPEILGKADDEEGQEIAFPTECPSC
GTELEQRGAHLFCNNKLGCKPQLIGRITHFASRDAMDIETFSVMTAEQLYEDCEVRDPAD
LYALTFDDLIKLERFGERKAQKLLEAFEKSKDRDLAAFLFALGIPNTGKATTKVLADHFG
GLDALMAASEEDLVQLPDIGGIVADSIVSFFADPLVKSSIARMREYGVKAEAEQRAVAVG
AADSVFNGKTVVLTGTLPTMTRDEAAKKLEALGAKVSGSVSKKTDFVIAGESAGSKLTKA
KDLGITVIEDEEMFKQMLGE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatacgcaggagccgcggcgccagagcagttggagcgcatgaagcagctggct
gacgaaattgcacgccacagctacaactattacacactcgataacccgaccatcagtgac
gctgagttcgacaagctttacgacgagctgactgcgcttgagcaatcgacgggcgtcgtc
ttggatcattccccgacgcagcgtgttggcggcgagttgctcaaagggtttgacccgcac
cgccatctatcccgcctatggagtctcgacaaagcacaaaacgtcgaagatttgcgtgcg
tggaatcaaagagttacgaaggcagtaagcgactggaatacgaagaatccgggtcaaccg
ccgcttccggcaccttcttatgtcattgagcttaagtatgatggcttaacgctcaatttg
acctatgacggaggtcgtctcgttcaagcgtcgacgcgcggcaatggcgtagtgggcgag
ggtattctagcacaggtgaagacgattcgctccgtgcctctcacgattccttttacagaa
gggctcattgaagtgcagggtgagggcataatgaacctttctgtactagaggcttacaac
cgaacagcggaggacccgctgaagaacgctcgcaacgcagcagcaggcgcacttcgcaac
cagaacccacgcatcacggcagagcgcaagctggatgctttcttctataatgtgggtcac
gcacaaggcgtgtcctttgagacgcatcgtcaaatgcagcagtttctgatcgacaatcgg
ttcaaggtgaacccatatgtcacctactgcgattctatagaagaagtcgaacaagaaatg
actcgtattaccgaaatgcgtccaacactcgactatctcattgatggtgccgtagtgaag
ctcgttgatatgcgcacgcgtgaggcgctgggctataccgacaagttcccgcgttgggcg
gtagccttcaagtttgaagcggaagaaacgacaaccgttctcgagtctgtatcctgggaa
gtaggtcgtacgggtaaaataacgccggttgcacgtgttgaagctgtcgagctcgcaggt
gttacggtacagaactgtacgcttaataacattggcgatatcgagcgcaaaaacttgaag
cacgcgctaggtactcgcgtcttcattcgtcgatccaatgacgtcatccccgagattctc
gggaaggcggatgatgaggaagggcaagagatcgcgttcccgacagaatgtccttcttgc
ggtacggagctcgagcagcgcggcgcccatctgttctgcaacaataagctaggctgcaag
ccgcagttgataggacggattacgcactttgcttcccgcgatgcgatggacattgagacg
ttcagcgttatgaccgcggaacaattatatgaagattgtgaagtgcgcgacccagccgat
ctatacgcactcacctttgacgatctgattaagcttgagcgtttcggtgaacgtaaagcg
cagaagctgctcgaagcgttcgagaagtcgaaggatcgcgatctcgctgccttcctcttc
gcgctcggcattccgaatacggggaaagcgacgacgaaggtgctcgcggaccatttcgga
ggtctcgatgcattgatggcggcaagcgaagaggatctcgtccagctgccggatatcggc
gggattgttgcggacagcattgtcagcttcttcgccgatccactcgtgaagagcagcatc
gcacgtatgcgcgaatatggcgtgaaagcagaggctgaacagcgtgcagtggcagtaggt
gcagcggatagtgtctttaatggcaagaccgttgtactgacgggtacgcttccgaccatg
acgcgcgacgaggctgcgaagaagctggaagcactaggggccaaagtttcaggcagtgta
tccaagaagaccgacttcgttatcgcgggtgagagtgcgggcagcaagctgaccaaagcg
aaggatcttggcattacggttattgaagatgaagagatgttcaagcagatgcttggggag
taa
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