Pseudomonas corrugata: AXG94_13340
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Entry
AXG94_13340 CDS
T04842
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcg
Pseudomonas corrugata
Pathway
pcg03030
DNA replication
pcg03410
Base excision repair
pcg03420
Nucleotide excision repair
pcg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AXG94_13340
03410 Base excision repair
AXG94_13340
03420 Nucleotide excision repair
AXG94_13340
03430 Mismatch repair
AXG94_13340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcg03032
]
AXG94_13340
03400 DNA repair and recombination proteins [BR:
pcg03400
]
AXG94_13340
Enzymes [BR:
pcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AXG94_13340
DNA replication proteins [BR:
pcg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AXG94_13340
DNA repair and recombination proteins [BR:
pcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AXG94_13340
NER (nucleotide excision repair)
GGR (global genome repair) factors
AXG94_13340
MMR (mismatch excision repair)
DNA ligase
AXG94_13340
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXG94_13340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AOE62699
UniProt:
A0A3M3E1I0
LinkDB
All DBs
Position
3096354..3098024
Genome browser
AA seq
556 aa
AA seq
DB search
MTLLLCALVFLMLPTLVIAAPCPDWPDERARSEVAALQQQIDAWDDSYYRLGRSLVADEL
YDQSRTQLGQWRNCFDLAAPPDPLRTASGKVLHPVPHTGLDKLKDADAVRAWLQNRADIW
VQPKVDGVAVTLIYRAGRLHQAISRGDGVQGHDWTATARKVDAIPQRLHRPSDMLVQGEL
YWRLTDHVQAREGSLNARATVAGLMARKDLTTEQTSSIGLFTWDWPEGPATLSERETQLH
ALGFADTRGYSHPVQAAGDAERWRDHWYRTPLPFASDGIVLRQSRRPPANRWQAKPPFWG
VAWKYPYAQSLAEVRKVHFKIGRTGRITPLLELEPVMLDDRQIRRVSVSSLKRWADMDIR
PGDRVAISLAGLTIPRLDGVVLRSVERPVITAPVAADYHPLSCWQPTPGCESQFLARLSW
LSGKHGLALPNVGPGTWEKLLAAGRLDGLLDWMTLDAAELANMTGFGERSSARLLVSLHS
ARRRPFGQWLKALGLPPAGAASLDGPWHVLAERTTDQWQAEAGIGPGRAAQLSAFFRDPH
VLGLSEVLRTAGVEGF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgctgttgtgtgctctcgtttttctaatgctccctactctcgtcattgccgcg
ccttgccccgattggcccgacgaacgtgccaggtcggaggtcgcggctctgcaacagcaa
atcgacgcttgggacgacagctactaccgtctcggccgctcactggtcgccgacgagctt
tacgatcagtcccgcacgcaactgggccaatggcgcaattgttttgatcttgcggcgccg
cctgacccgctgcgcacagcaagcggcaaagtgctgcatccagtccctcatacaggcctg
gataagctgaaggatgccgacgcggtgcgggcctggctgcagaatcgggcagacatctgg
gtccagccgaaagtcgacggtgtggcggtcaccctgatttatcgcgcaggtcgtctgcat
caggcaatcagccgcggcgatggcgtccaaggacacgactggacggcaacggcgcgcaag
gtcgacgccatcccccagcgcctgcacaggccttcggacatgctcgttcagggggagttg
tactggcgactgactgatcacgtgcaggccagggagggcagtcttaatgcccgggcaacc
gtggcgggcctgatggctcgcaaggacctgacgactgaacaaacctcaagcatcggcctg
ttcacctgggactggcccgaaggccccgccaccctgtccgagcgcgagacccaattgcat
gcgctgggcttcgccgacacccgcggctacagccacccggtgcaagcagccggcgacgcc
gaacgctggcgcgaccactggtatcgcacaccactgccattcgccagcgacggcatcgtc
ctgcgccagagccgcagaccgcctgccaaccgctggcaggccaagcctccgttctggggc
gtggcctggaaatacccttacgcccagtcattggccgaagtgcgcaaggtgcatttcaag
atcgggcgcaccggacgcatcacaccgttgctggaactcgagcccgtcatgctcgacgac
cgacagatccggcgggtcagcgtcagttccctcaaacgctgggcggacatggacatccgc
cccggagaccgggtcgccatcagcctcgccgggctgaccatcccgcgactcgatggcgtt
gtgctgcgcagtgtcgagcggccggtcatcactgcccccgtggcggcggattatcacccg
ctgagttgctggcaaccgacgcccggctgcgaaagccagttcctggcgcgcctgagttgg
ctcagcggcaagcacggcctcgccctgcccaatgtgggccccgggacctgggaaaaactc
ctggctgcgggccgactcgacggattgttggattggatgaccctcgacgccgccgagctt
gctaacatgaccggcttcggcgaacgcagcagcgcccgcctgctcgtcagtttgcacagc
gcccgacgacgcccgttcggtcaatggctcaaggccctcgggctaccgcccgccggagcg
gccagtctggatggaccgtggcacgtgctggccgaacggactaccgaccaatggcaagcc
gaagccggcatcgggccgggacgagccgcgcaattgagcgcttttttccgtgacccgcac
gtgctggggttgagtgaagtattacgcactgccggggtcgaaggtttctga
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