Pseudomonas chengduensis: QYM18_09875
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Entry
QYM18_09875 CDS
T09586
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pche
Pseudomonas chengduensis
Pathway
pche03030
DNA replication
pche03410
Base excision repair
pche03420
Nucleotide excision repair
pche03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pche00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QYM18_09875 (ligB)
03410 Base excision repair
QYM18_09875 (ligB)
03420 Nucleotide excision repair
QYM18_09875 (ligB)
03430 Mismatch repair
QYM18_09875 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pche03032
]
QYM18_09875 (ligB)
03400 DNA repair and recombination proteins [BR:
pche03400
]
QYM18_09875 (ligB)
Enzymes [BR:
pche01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QYM18_09875 (ligB)
DNA replication proteins [BR:
pche03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QYM18_09875 (ligB)
DNA repair and recombination proteins [BR:
pche03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QYM18_09875 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QYM18_09875 (ligB)
MMR (mismatch excision repair)
DNA ligase
QYM18_09875 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QYM18_09875 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
RecR_HhH
RNA_ligase
HHH_2
Motif
Other DBs
NCBI-ProteinID:
WKC39377
LinkDB
All DBs
Position
complement(2099727..2101418)
Genome browser
AA seq
563 aa
AA seq
DB search
MKRWIALLLFPLTAQTSPCPDWPADRAKSELAALSQQIAEWDDAYHNQGRSLVADEIYDQ
ARERLQSWHRCFPTARTALADPLAGSSGTIAHPVPQTGLRKLNDAAVAEWINTRDDLWIQ
PKVDGVAVTLVYRDGALRQAISRGDGRLGQDWTARARQLPAIPARLQEPLDAVLQGELYW
RLDGHVQGRDGGVGARGKVAGLMARQTLDQQQVDAIGLFVWDWPDGPANMPERLQALQRL
GFGDSLHYTQPLRDAKEARSWRQRWFDQPQPFASDGVVLRQGTRPPGERWQTEAPHWAIA
WKYPASQALAVVQAVDFSIGRTGRITPILRLQPVDLDERRISRVALGSLQTWEKLDIRPG
DQVAIRLAGLTIPRLDQVIWRSPERAIVQAPDPNQYHALSCWRLSSECQQQFQARLNWLA
GKQGLNLPGVGPGTWNTLLAGQKLEGLLDWLALDSEHLQQLPGIGPRRASQLQQAFAQAQ
QRSLQQWLQALGAPAGFQLGAKDDWATLVARGHAEWMQQPGVSQNSAERLLAFFSHPEVQ
RLGVQLQEAGTVGFLPQENSPRG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgctggatcgctctgctgctctttcccctcaccgcccagaccagcccctgcccc
gactggcccgctgatcgcgccaagtccgagctcgccgcactcagtcagcagatcgccgag
tgggacgacgcctaccataaccagggccgctcgctggtggctgatgaaatctatgaccag
gcccgcgagcgcctgcaatcctggcatcggtgctttccgaccgcccgcacggcattggca
gaccctctggctggcagcagcgggacgatcgcgcacccggtgccgcagaccgggctgcgc
aaactgaacgatgcagcagtcgccgaatggatcaacacccgcgacgacctgtggattcag
cccaaggtcgacggtgtcgcggtcaccctggtctaccgagacggcgcgctgcgacaagcc
atcagccgtggcgatggacgtctgggccaggactggacagcccgcgcgcggcagctgcca
gccattcccgcacgcctgcaggaaccactcgatgccgtgttgcagggcgagctctactgg
cgcctggacggtcacgtgcaaggccgcgacggtggggttggcgcccgcggcaaggtggca
ggcctgatggcgcgacaaacgctcgaccagcaacaggtcgatgccatcggcttgttcgtc
tgggattggccggatggcccggcgaacatgccagagcgcctgcaagccctgcagagactg
ggcttcggcgacagcctgcactatacccagcccctgcgggacgcaaaggaagcccgcagt
tggcgccaacgctggttcgatcagccgcagccgtttgccagcgatggtgtggtcctgcgt
cagggcacgcgaccacccggggagcgctggcagacagaagcgccgcactgggcgattgcc
tggaaatacccggccagccaagcgctggccgtggtgcaggcggtggatttcagcatcggt
cgcactggacgtatcacgccgatcctgcgtttgcagccggtcgacctcgacgagcggcgc
atcagccgggtcgctctcggctcgctgcaaacctgggagaagctggacatacgccccggc
gatcaggtggcgatacgcctggccggcctgaccattccacgcctcgatcaggtgatctgg
cgcagcccggagcgtgcaatagtccaggctcccgatcccaatcaataccacgccctgagt
tgctggcgactcagtagcgaatgtcagcaacagttccaggcacgcctgaactggctcgcc
ggcaaacaggggctgaacctgcccggcgtaggaccaggcacctggaacacgctactggcg
gggcagaaactggagggtctgctcgattggctggcactcgatagcgagcacctgcaacag
ctgccgggtatcggcccaaggcgcgcctcgcagctgcagcaggccttcgcccaggcccag
cagcgctcactgcagcaatggctgcaggctctcggtgcaccagctggtttccagctcggc
gcgaaggatgactgggccacgctagtggctcgcggccacgccgaatggatgcagcaaccc
ggcgtgagccagaacagcgccgagcgcctgttggcgttcttcagccacccggaggttcag
cgcctgggcgtgcaactgcaggaggccggcaccgtcggtttcctgccgcaggaaaattca
ccgcgcggttga
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