Paenibacillus chitinolyticus: PC41400_02965
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Entry
PC41400_02965 CDS
T06610
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pchi
Paenibacillus chitinolyticus
Pathway
pchi03030
DNA replication
pchi03410
Base excision repair
pchi03420
Nucleotide excision repair
pchi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pchi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PC41400_02965
03410 Base excision repair
PC41400_02965
03420 Nucleotide excision repair
PC41400_02965
03430 Mismatch repair
PC41400_02965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pchi03032
]
PC41400_02965
03400 DNA repair and recombination proteins [BR:
pchi03400
]
PC41400_02965
Enzymes [BR:
pchi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PC41400_02965
DNA replication proteins [BR:
pchi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PC41400_02965
DNA repair and recombination proteins [BR:
pchi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PC41400_02965
NER (nucleotide excision repair)
GGR (global genome repair) factors
PC41400_02965
MMR (mismatch excision repair)
DNA ligase
PC41400_02965
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PC41400_02965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
DZR_2
RTT107_BRCT_5
Auto_anti-p27
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QAV16712
UniProt:
A0A410WQW1
LinkDB
All DBs
Position
657641..659659
Genome browser
AA seq
672 aa
AA seq
DB search
MADFTAEMKTLIEAIEQHNYNYYTLDRPVVTDAEYDKLYDRLVELERESGVTLPNSPTRR
VGGELLKGFEPHRHLSRLWSLDKTRDKDGLNAWLTRVLKLVGEYNKQNPDNPLPHPTFVV
ELKFDGLTLNLTYDKGILVQASTRGNGTVGEGILEQVKTIRSVPLEIPYKDGTVEVQGEG
LMFLSVLDQYNQTAAEPFKNARNAAAGALRNLNPQVTAKRKLSAFFYNVGYSDNLRFTDH
REMVEFLKENRFKVNPDIKFFDSIDDVMEELERIGSNRLSYDFLIDGAVVKVADMRTREV
LGYTEKFPRWAIAFKFEAEEVTTVLESVSWEVGRTGKITPVARVEPVDLAGVTVQNCTLN
NIGDIERKNLKHALGSLVYIRRSNDVIPEILGKATEETDGEEIVFPENCPACGTPLEQRG
AHLFCPNRLGCRPQMIGRITHFASRDAMDIDTFSVMTAEQLYQEVGVRDPADLYGLTYDD
LIKLERFGEKKANKLLAAFEKSKECDLSSFLFALGIPNTGKTTTKVLAEHLGSLDKVKEA
SIEELIALPDVGGIVADSIYSFFRDPLMQDSISRMLAAGVAPRAEEKPAAAADESHPLFG
KTIVLTGTLSAMSRDEAADKLEALGAKVTGSVSKKTDIVIAGESAGSKLAKAQSLGIRII
DDEQELLALLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggccgacttcactgcggagatgaagacactcatcgaagctatcgagcagcacaattac
aactattacacgctggaccgcccggtagttactgatgccgaatatgataagctgtatgac
cggctggtggaattggagcgggagtcgggagtgactcttccgaattctcctacaaggcgt
gtcggcggcgagctgttgaaagggttcgaaccccaccgtcatctctcccggctgtggagt
ctggacaagacacgcgacaaagacggccttaacgcgtggctgacgcgggtattgaagctc
gttggcgaatacaataaacagaacccggacaatcccctgccgcatccgaccttcgtcgtc
gagcttaaatttgacggtctcaccctcaatttaacgtatgacaaggggatactagtccaa
gcttcgacccgtggcaacggaacagtaggagagggaatcctggagcaggtaaaaaccatc
cgctccgtccctttggagattccgtacaaagacgggaccgttgaagtacagggcgaaggc
ctgatgttcctgtccgttttggatcagtacaatcagacggcggccgaaccgttcaaaaat
gcgcgcaatgcggccgcgggggctcttcgcaacctgaatccgcaagtaacggcgaaacgc
aaactgagcgccttcttctataatgtaggttattccgacaacctccgattcaccgaccat
cgggaaatggtggagtttcttaaagagaatcggtttaaagttaatccggacatcaaattt
ttcgactccatcgacgatgttatggaggaactggagcgaatcggaagcaaccgcctgagt
tatgacttcctcattgacggtgcggtagtcaaagtggcggatatgcgtacgcgggaagta
ctgggctataccgagaaattcccgcgctgggctatcgcattcaagttcgaggctgaagag
gttacgactgttctggaatccgtatcctgggaagtgggacgaacgggcaaaataacgccg
gtagcgcgtgtagaaccggtcgatctggcaggtgtgaccgtacagaactgtacgctgaac
aatatcggtgacatcgaacgcaaaaacttgaagcatgctctggggagtcttgtttatatc
cgccgctcgaacgacgtgatcccggaaatactcggcaaagccacggaagagaccgacggt
gaagagatcgttttcccggaaaattgcccggcctgcggaactccgcttgaacagcgcggg
gctcatttattctgtccgaaccgcctgggctgtaggcctcagatgatcggcagaattact
catttcgcttcccgtgacgcgatggatatcgatacgttcagtgtgatgacggcggaacag
ctctatcaggaggtaggtgtacgcgatcctgccgacctgtacgggctcacttatgacgat
ctgatcaaactggagcgtttcggcgagaaaaaagccaacaagctgcttgccgcgttcgag
aagagcaaggagtgcgacctttcgtccttcctgtttgctttaggtatcccgaatacgggc
aaaaccacgaccaaagtactggctgagcatctcggcagcctcgacaaggtcaaggaggcg
tcgatcgaagaactgatcgcgctgccggatgtcggcggaatcgtagccgacagcatctac
agcttcttccgcgacccgctcatgcaggacagcatctcccgcatgcttgcggcgggcgtc
gcacctcgcgcggaagaaaagccggccgccgcggcggacgagagccatcccctcttcggc
aaaaccatcgtgctgacaggtacgctcagcgcgatgagccgggacgaagcggcggataag
ctcgaagccctcggcgccaaagtaaccggcagcgtctcgaagaagacggacatcgtgatc
gccggggagagtgccggcagcaagcttgccaaggcccagtctcttggcattcgcattata
gatgacgaacaggagcttcttgctctgcttggagaatag
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integrated database retrieval system
