Pochonia chlamydosporia: VFPPC_05883
Help
Entry
VFPPC_05883 CDS
T09407
Name
(RefSeq) ATP-dependent DNA ligase domain-containing protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VFPPC_05883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_05883
Enzymes [BR:
pchm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VFPPC_05883
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
VFPPC_05883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
28848998
NCBI-ProteinID:
XP_018141943
UniProt:
A0A179FHW4
LinkDB
All DBs
Position
5:complement(1901070..1904328)
Genome browser
AA seq
1032 aa
AA seq
DB search
MPIPFVLVCDLLDECHRLSITNASNTRAVVDWFSRHRGRLDAHDANLAALLSTLLPEKRT
DRVYCIKAPTLEKIIGRALMLGSSRIAELALYKQPGQGADLAECAERILTTTVSPSPGPY
FGTNDLTRCQPNPMCNENLRITVEEIDEVMHGLASKIKWSSPSIRNSQATMTLRGRCDLE
DVYRRLSAREAKWFTRLVLKDYQPLILDSQLVYRCCDSALPLILKAQEDFATAIQTLQTA
KGNMLPNSVKPTARRDRILATVKPKLGVKVGRQNWFKGRSIKHCIDMGHGRMSVEQKIDG
EYCQVHIEVVGGKPRVQIFSKSGKDSTEDRCKLHGVIIKSLGFGTPHCQVRTDCIFEGEL
VVYNDEENKIMPFHKIRNHVARRGRFMDVDMDSPPRSYENLMIIYYDILLLNDQSLLGTR
HSERFKMLERTIQCETGRAELVKRTLVDFHRPTAASELRKAFANVITSKGEGLVLKPDDP
YFNFQADDRRNSGLCIKLKKEYIGNFGDVGDFAVVGAGFNPTKAKTYKIPNLRWTVFYVG
CLNNKEEVKRWNAKPEFTVVSAVEITEPLLKSFISHCHPVSVSLEKNDATKLHIPRGIEA
DAPLRVAFQKPAVFDLRCFSFDKPGNMGFWTLRFPVVSKIHFDREYTDTVTFDELQQMAK
EARATPDLEDSQENLQWIAKLEGADPRGRAVDAVSQLTATTLATPSPCSSRTPRSPVMLR
SLSKSPEIIRSCHVSQKISVTSSASLITPPTSSPVAEDIKTPEPRSKRKSAILSSQCANS
ASKRRRSDIIPSSPVSGSRKPRKPLEDVDGNASQVSATPSLSFVTTAAGLDQSVDLSNLV
SSTQETQKNMTVAEQNDCENLAGSEISCEISCTPITISSEEASQTNRSSQVNNGCQFAGN
KCHLLDHTILLPSGALGQSTERTALLNSHGVSGFAVPMDDWLMQNNHGATLGNKSPQVIL
LVDTVNKARETKDVLADVERVRKTLPRKTRGWIAVYDWRMLRNLQVMEDEEAKDKYYDGF
HDPWRRWYCGIV
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgccgattccctttgttctcgtgtgtgacttgctggacgaatgtcaccgactctccatc
accaacgcatccaatacacgagctgttgtggattggttttctcggcatcgaggtcgtctt
gatgcccacgatgctaatcttgctgcattgctttccaccttgctaccagaaaagcgaaca
gatcgggtgtattgtatcaaagcaccaacactggagaagatcattgggagagccttgatg
ctgggatcatcccgaatcgccgaactggctttgtacaaacaacctggacagggtgccgat
ctggctgaatgtgctgaacgaatacttacaacaactgtcagtcctagccctggtccctat
tttggaaccaatgacctaactcgttgccagccaaacccgatgtgcaatgaaaatctccga
atcaccgtcgaagaaattgatgaggtgatgcacgggctggcatccaagatcaaatggagc
tccccatctatccgcaattcgcaagccaccatgaccctgaggggcagatgcgatctagaa
gatgtctatcgtcgactctctgctcgtgaggccaagtggtttacccggcttgtcctcaaa
gactaccagcctctcattttggattctcagcttgtatatcggtgctgcgactcagctctg
cctctgatcctcaaggcccaggaagatttcgccactgctattcaaacacttcaaacagcc
aaaggaaacatgctccccaattctgttaagccaaccgcgaggagggatcgtatcctcgcc
acagttaagccaaaactgggagtcaaggttggcagacagaactggttcaagggccgcagc
atcaagcattgcatagacatgggccatggtcgcatgagcgtcgagcagaagattgacgga
gagtactgccaggtacacattgaagtagtaggtgggaaacctcgcgttcagatcttttcc
aagagtggtaaggatagtacggaggataggtgcaaactccacggagtgataatcaagtct
ctcggattcggcacaccacactgccaggtgcgcaccgattgcatttttgaaggagaactt
gttgtgtacaatgacgaggagaataagataatgccatttcataagatcaggaaccatgta
gcgagacggggccgcttcatggatgtggatatggactcaccgccacgttcctatgaaaac
ctcatgattatatactacgacattctactccttaacgatcaatcgttgctaggaactcgt
cactcagaaaggttcaagatgctggaacgaactatacaatgcgagactggtcgggcagag
ttggtaaaacgtactcttgtcgactttcatcgcccaactgctgcatcagagctaagaaaa
gcctttgccaatgtcattactagcaaaggggagggactagtccttaaaccagacgacccc
tatttcaacttccaagccgatgaccgacgtaactctggtctatgcatcaaactcaaaaag
gaatacattggcaattttggagatgtgggagattttgccgtcgttggcgccggtttcaac
cctacgaaggccaaaacgtacaaaattcccaatcttcggtggaccgtattctacgtcggc
tgcttgaataacaaggaagaagtcaaacgttggaatgctaagccagaatttacagtggtc
agcgctgtcgagattacggaaccgcttctcaaaagcttcatctctcactgtcatcccgtc
tcggtttctttggagaagaatgatgcaacaaaattgcacatcccgaggggcatcgaagct
gatgctccgttgagagtggcgttccagaaacctgcagttttcgatttgaggtgcttcagc
tttgataaacctggaaacatggggttttggacgttgcggttccctgttgtttcaaagata
cattttgacagagagtacactgacacggttacatttgatgagcttcaacaaatggccaaa
gaggccagagccaccccagatctggaagatagccaggaaaaccttcagtggattgcgaag
cttgaaggagcagaccccagaggacgcgcagtcgatgccgtcagccagcttactgctaca
acgttggctacgccgtcgccttgtagttcgaggacacctagatcaccggtgatgcttcga
tcgttaagtaaaagccccgaaataatcagatcctgccatgtcagtcaaaaaatatctgtc
acttcaagcgcatccctcatcactcctcccacttcttctccagtagcggaggacatcaaa
acgccagaaccaagatccaaacgcaaatcggccatattgtcttcgcaatgcgcaaattct
gcctcaaaacgccgccgttcggacatcattccatcgtcaccagtatcagggtctaggaag
ccccggaaacctctagaagatgtggatggtaatgcctcacaggtgtccgccacgcccagc
ttgtcctttgttaccaccgccgccgggcttgaccagtccgtggatctcagcaatctcgtg
tcttcaacacaagaaacgcagaaaaatatgactgtggcagaacaaaatgattgtgaaaac
ttggcggggagtgaaatcagctgcgaaatcagctgcacccctataaccatatcgtccgag
gaagcatctcagacaaaccggtcctcccaagtcaataatgggtgccaattcgctggtaat
aagtgccatctgcttgatcacacaattttgctgccttccggagctttggggcaatcgaca
gagcggactgctttgttgaactcccatggcgtatccgggtttgcagtgccgatggatgac
tggttgatgcaaaacaaccatggcgctactctggggaacaagtctccacaagtcattttg
ttggttgacacagtgaacaaggcgagagagaccaaggatgtgctggcggatgtggaacgg
gttcgaaagacactaccgcggaaaacgagaggttggatagctgtctatgactggcgaatg
ttgaggaatcttcaggtcatggaagatgaagaagcaaaggacaagtactatgatggattt
cacgatccgtggcggaggtggtactgtggaattgtataa
DBGET
integrated database retrieval system
