Psychrobacter cibarius: Q6344_02085
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Entry
Q6344_02085 CDS
T09259
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcia
Psychrobacter cibarius
Pathway
pcia03030
DNA replication
pcia03410
Base excision repair
pcia03420
Nucleotide excision repair
pcia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q6344_02085 (ligA)
03410 Base excision repair
Q6344_02085 (ligA)
03420 Nucleotide excision repair
Q6344_02085 (ligA)
03430 Mismatch repair
Q6344_02085 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcia03032
]
Q6344_02085 (ligA)
03400 DNA repair and recombination proteins [BR:
pcia03400
]
Q6344_02085 (ligA)
Enzymes [BR:
pcia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q6344_02085 (ligA)
DNA replication proteins [BR:
pcia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q6344_02085 (ligA)
DNA repair and recombination proteins [BR:
pcia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q6344_02085 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q6344_02085 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q6344_02085 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q6344_02085 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
RUNDC1
PSF3_N
Motif
Other DBs
NCBI-ProteinID:
WLG14168
LinkDB
All DBs
Position
494505..496616
Genome browser
AA seq
703 aa
AA seq
DB search
MTDPISPLTSKNINKDINKDINKDINTTNPIKNNDAIVTQMRTFIDALKQHNYAYYVLDN
PILEDSEYDQLRRSLLALEEQYPDLVQPDSPINQVGDMPLSAFTQVTHDIPMLSLGNVFD
YDELHGFMRRVNDRLNDAQKNPEYEMELKLDGLAVSLKYAHGQFIKAVTRGDGQTGEDIT
QNAKTIRNLPLWLAAASEIPLLEVRGEVLMPKAGFERLNRLAEEKGDKTFANPRNAAAGS
LRQLDPAIAASRPLAFYCYSVNQGLPEHLKTQSAALAWLKTIGFTVSAVEVVQNPREAQA
YYESVKETRGELPFEIDGMVIKVNSLALQQQLGFLSREPRWATAYKFPAETVMTRLHAIE
WQVGRTGAITPVGKLEPVKVGGVTVSNVTLHNFGEIQRLDVRAGDMVSVHRAGDVIPKVT
RVWTDQRPENSEPVTLPSTCPVCDSPVVLPKDEALARCTGGLFCPAQQVEALIHFVSRRA
MDIDGLGASWLISFFEHGLVKTVADIYQLHNHQDELITLEKLGEKSVQNILSAIEASKHT
TLARFIYALGIRGVGETTAQNLAQQFGDLDSLMAADIDKLLQTPDVGAITAELAYKFFRA
PHNIEVITALREAGVHWDKVEQVASEGLPLDGQTWVITGALDSMARDEAKAKLQALGAKV
SGSISAKTTALLAGEKAGSKMAKAEKLGVKIVAEEEFLTMVRE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccctatctcaccgcttacctctaaaaacattaataaagacattaataaagac
attaataaagacatcaatactaccaaccctataaaaaataatgatgctatcgtcacccag
atgcgcacgtttatcgatgcgcttaagcagcacaattatgcctactatgtgcttgataat
cctattttagaagacagcgaatacgatcagttgcgccgctctttattggcgcttgaagaa
caatatccagatttggtacagccagacagcccaatcaatcaagttggcgacatgccgcta
tcggcttttactcaagtcactcatgatattccgatgctctcgcttggcaacgtctttgat
tatgatgaattacatggctttatgcgccgcgtgaatgatcgtctcaatgatgcgcagaaa
aaccctgaatatgagatggagctaaagctagatggcttggcggtatcactcaagtatgct
catggacaatttataaaagcggtcacacgtggcgatggacaaacgggcgaagatatcacc
caaaatgccaaaaccattcgcaatttgccactttggctcgcggctgcaagcgagattcca
ttattagaagtgcgcggtgaagtgctgatgccgaaagcgggctttgagcgtttgaatcgc
cttgctgaagaaaagggcgacaaaacctttgccaatccacgcaatgctgccgctgggagt
ttacgtcagctagatcccgccattgctgctagccgtccgctcgcattttactgttattca
gtcaatcaagggttgcctgagcatctcaaaacccaatcagcagcgcttgcttggctaaaa
accattggctttaccgtcagtgcagtcgaggtggtgcaaaatccacgcgaggctcaagcc
tattatgaatcagtgaaggagacacgtggcgagctgccgtttgagattgatggcatggtg
attaaggttaatagcttggcgttgcagcagcagcttggttttttatcacgtgagccgcgc
tgggcaaccgcttataaattccctgccgaaaccgtcatgacacgcttgcatgctatcgag
tggcaagtcggacgcacgggcgcgattacgcctgttggtaaattagaacctgtaaaagtc
ggcggcgtcacggtcagcaatgtcaccttgcataactttggtgaaattcagcgcttggat
gtgcgtgcaggcgatatggtcagcgtccaccgtgcaggcgatgtgattcctaaagtgacc
cgtgtttggacagatcaacgtccagaaaattctgaacccgttacattgccatcgacctgc
ccagtatgcgactcacctgtggtgttacccaaagatgaagcgttggcgcgttgcactggt
gggctgttttgtcccgcgcagcaggtcgaggcgctcattcactttgtctcgcgtcgagcg
atggatatcgatggcttaggcgcaagttggctgattagcttttttgagcatggcttggtg
aagacagtcgctgatatctatcaattgcacaatcatcaagacgagctgattacgcttgag
aagctgggcgaaaaatcagtacaaaacatcctcagcgctatcgaagccagtaagcatacg
acactcgcgcgctttatctatgcgctgggtattcgcggtgtcggtgagacgacggcgcag
aatttggcgcagcaatttggcgaccttgatagcctgatggctgctgatatcgataagcta
ctgcaaacgcctgatgtcggcgcgatcactgctgagcttgcttataaattcttccgcgca
ccacacaatatcgaagtcattactgcactacgtgaagctggcgtccactgggataaggtt
gaacaagtcgcatcagaaggattgccgctcgatgggcaaacgtgggtcatcaccggtgcg
ctcgatagcatggcgcgtgatgaagccaaagccaagctgcaagcactaggggcaaaagtc
tcggggagcatctcagcaaaaacgactgcgctactggcaggggaaaaggctggctcgaaa
atggcaaaagcggagaaactaggcgtcaaaattgtggctgaggaagagttcttgacgatg
gttagagagtag
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