Proteus terrae subsp. cibarius: F9282_12880
Help
Entry
F9282_12880 CDS
T06330
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcib
Proteus terrae subsp. cibarius
Pathway
pcib03030
DNA replication
pcib03410
Base excision repair
pcib03420
Nucleotide excision repair
pcib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F9282_12880 (ligA)
03410 Base excision repair
F9282_12880 (ligA)
03420 Nucleotide excision repair
F9282_12880 (ligA)
03430 Mismatch repair
F9282_12880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcib03032
]
F9282_12880 (ligA)
03400 DNA repair and recombination proteins [BR:
pcib03400
]
F9282_12880 (ligA)
Enzymes [BR:
pcib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F9282_12880 (ligA)
DNA replication proteins [BR:
pcib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F9282_12880 (ligA)
DNA repair and recombination proteins [BR:
pcib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F9282_12880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F9282_12880 (ligA)
MMR (mismatch excision repair)
DNA ligase
F9282_12880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F9282_12880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QGW03824
LinkDB
All DBs
Position
complement(2682708..2684735)
Genome browser
AA seq
675 aa
AA seq
DB search
MNKNTQQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEHPELITSDSPT
QRVGALPLTAFEQVRHEIPMLSLDNAFDETSYLAFDKRLRDRLKNSEEITFCCELKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLRLYGEDIPARIEIRGEVFMNEK
GFEYLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPTSH
YERLQQFKKWGLPVSDAVKLCSGSKAVLDFYHHVEEIRSNLGFDIDGVVIKVDDIALQEE
LGFVSRAPRWAIAYKFQAQEQMTIIKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH
NADEIERLGIRIGDTVVIRRAGDVIPQVVSVIEEKRPDDAQEIIFPTHCPICDSDVERIE
GEAVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLDE
KILSGLERMGEKSAKKLITALDKAKSTTFARFIYALGIREVGEATASGLTTHFSTLDALR
NADVEALKSVPDVGDVVAKHVVNFFQEEHNRTVIEQLINDAGITWQAPVIVTHEAGDNPF
AGKTVVLTGSLSQLTRDEAKDRLAALGAKVSGSVSKKTDMVIAGEAAGSKLVKANELGIA
IIDEDEMIRLLDQSK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacactcaacaaaaaattgataaacttcgcgttactctacgtcaccatgaa
tatctctatcatgtcatggacgcacctgaaatacctgatgctgaatacgatcgcttaatg
aatgagctaaaagcattagaagctgaacaccctgaattaattacttctgattcgccaaca
cagcgggtcggcgccttacctctgacagcatttgagcaagtgagacatgaaattccgatg
ctctctttagataatgcttttgatgaaacaagctatctagcttttgataagcgtttacgt
gatcgtttaaaaaatagtgaagagatcactttctgttgtgaattaaaattagatggatta
gcggtgagtttactttatgaaaatggagtattagtacaagctgcaacgcgaggtgacggt
acaacaggggaaaatatcactgagaatgtgagaacaattaaggctattccactacgttta
tatggcgaagatatccctgctcgcattgaaattcgtggcgaagtctttatgaatgaaaaa
ggctttgaatatttaaacgaggaagcgcgacgtactggtggaaaagtttttgctaaccct
cgtaatgccgcagctggctcattaagacagctcgatcctcgtattacagcaaaacgtcca
ttaacctttttctgttatggcgttggtgtactagaaggtggtgaattaccaacaagccac
tatgagcgcctacaacaatttaaaaaatggggattacccgttagcgatgctgtaaaactt
tgctcaggtagcaaagcagtccttgatttttatcaccatgtagaagaaattcgctctaat
ttaggttttgatattgatggtgttgttatcaaagttgatgatattgcactgcaagaagaa
ctgggttttgtatcaagagcaccacgttgggctattgcttataaattccaagctcaagag
caaatgacgattatcaaagatgttgaattccaagtagggcgtactggtgcgattacacct
gtcgcacgtttagagcctgttcaagtagcgggtgtggttgtgagtaacgcaacgttacac
aatgctgatgaaattgaacgcttagggatacgcattggcgataccgtggttattcgccga
gctggtgatgttattcctcaggttgtcagtgtgattgaagaaaaacgtcctgatgatgct
caagaaattatctttccgacacattgtcctatttgtgattctgatgttgagcgcattgaa
ggtgaagctgttgcacgttgtactggtggtttaatttgtggcgcgcaacgtaaagaagca
cttaaacattttgtttcacgtcgagccatggatgtggatggaatgggtgataaaattatc
gaccaactggttgagaaggaatatgtcaaaacacctgctgatctcttccgtttagatgaa
aaaatcctgtctggtttagagcgaatgggtgaaaaatcagctaaaaaattgatcacggct
ttagataaggctaaatcaacgacatttgcacgttttatttatgcactgggtattcgagaa
gttggtgaagcaacagcaagtggattaacaacacatttctcaacacttgatgcattacga
aatgcagatgttgaagcactaaaatccgttcctgatgtgggcgatgttgtggctaaacat
gtcgttaatttcttccaagaagaacacaatagaacggttattgaacaattgatcaatgat
gccggtattacatggcaagcgcctgttattgtgactcatgaagcaggtgataatccattt
gcgggcaaaactgttgtgttaactggatcactttcacaattaacgcgtgatgaagcaaaa
gacagattagctgcattaggcgcaaaagtgagcggaagtgtttctaaaaaaacagatatg
gtaattgcaggtgaagctgctggctctaagttagtgaaagctaacgaattggggatagcc
attatcgatgaagatgaaatgatacgactacttgatcaatcgaaataa
DBGET
integrated database retrieval system
