Prosopis cineraria: 129318321
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Entry
129318321 CDS
T09047
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pcin
Prosopis cineraria
Pathway
pcin04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
129318321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129318321
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
129318321
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
129318321
NCBI-ProteinID:
XP_054819025
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MGVPAFYRWLADRYPLSISDVVEEEPAAGDAGVSCPVDVSKPNPNGMEFDNLYLDMNGII
HPCFHPDGKPAPATYDDVFKSIFDYIDHIFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKEFEAVGELLSSKDKPETFDSNVITPGTQFMAVLSVALQYYIQ
TRLNHNPGWRNTKVILSDSNVPGEGEHKIIQYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVVTLPGQQEKCFSCGQAGHLAADCRNKPGDDAEDWNPLDDTPIHKK
KYQFLNIWVLREYLQYELDIPNPPFEIDFECLVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHIYRREFTAMGGYLTEAGEVFLDRVEHFIQAVAVYEDQIFQKRVRIQLAAESNEE
MKARARGEMPEEPRASAVDKVRLGEPGYKERYYAEKFGVSGLEEIDKIKKDVVLKYVEGL
CWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSS
NALPEKYRNLMTDPSSPIFDFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKLEG
TLTAEEQLRNSVMLDLLYVSHEHALAPHIFLYYQIYHQLAPFERPAWSIDTNASSGGMNG
YLWLSERNGLRPIVFSPINGLPDIEHNQVLNITYLNPHRSHRHIPRPPAGVVMPEKILKP
IDIKPFPVLWHEDNAGRRYGRERPQVPGAIAGPQLGEAAHRLVKNTLNIKLNNASYGLLE
QPYQTSPNHHAMNRHRAAGSSGYGKCYVDDASSYYAHNHHHQGMMSGRLRFPISSNGGQN
DRQNFRIQDRSQYPEQFHNMKTGFSAMTTTMVSCKPPPMLLRPPSSRSASNLQHVPSMGP
PIPPPKWITNGINSRHHDPAHGITSDKQMKKVYQVKTRHAQNMPEQAER
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagccttctacaggtggcttgccgaccgctatccactctcgatttccgat
gtagtcgaagaagagcccgccgccggcgacgccggtgtttcatgccctgtggatgtgtcg
aaacctaatcccaatggcatggagttcgacaacttgtacttggacatgaacggtatcatt
cacccttgtttccaccccgatggcaagcctgcacctgctacctatgatgatgtatttaaa
tcaatatttgattatattgaccatatcttttcgttggttcgcccgaggaagcttctctat
cttgcaattgacggtgttgcaccaagagccaaaatgaatcagcagcgttctcggcgcttc
agagcagcaaaggatgcagctgaagctgaagctgaagaagaaaggctgagaaaagaattt
gaggctgtgggagagcttttatcttctaaggacaagcctgaaacgtttgactcaaatgtc
atcactcctggcactcaatttatggcggtgctgtctgtggcccttcagtattatatacag
actagattgaatcataaccctggctggcggaatacaaaggttatactttctgattcaaat
gtccctggtgagggagaacataaaatcattcaatacattcgacttcaacgtaaccttcct
ggttttaatccaaacactcgccattgtttgtatgggttggatgctgatttgattatgctc
tctttagcaactcatgaggttcacttttcaatattgagggaggtggttactcttcctgga
caacaggagaagtgtttttcatgtggccaagctggtcatcttgcagctgattgtcgaaat
aaacctggtgatgatgctgaggattggaatccgctagatgataccccaattcacaagaaa
aaataccagtttcttaatatctgggtactacgggaatacttgcaatatgaattggatata
ccaaacccgccttttgagattgacttcgaatgcttagtggatgattttgtttttctatgc
ttctttgttggcaatgactttcttccacacatgccgacattagagatcagggagggggct
ataaatttactgatgcatatttatagacgggaattcactgccatgggtggttatcttact
gaagctggtgaggtcttcttggatagagtggaacattttatccaagctgttgctgtttat
gaagatcaaatttttcagaaacgagttcgaattcagctggctgcagaaagtaatgaagag
atgaaagctagggcaagaggggaaatgcctgaagagccacgggcctctgctgttgataag
gttaggttaggggagcctggatacaaggaaaggtattatgctgaaaagtttggtgtgtca
gggctggaggagattgacaagatcaagaaagatgtagttttgaagtatgtggaaggcctt
tgttgggtttgccgatactactatcagggtgtttgctcatggcaatggtactacccatac
cactatgctccttttgcttctgatcttaaagatctagctgatctggaaataacttttttc
ttaggagaaccatttaagccatttgatcagcttatggggaccttacctgcttcaagttca
aatgcactgcctgaaaaatatagaaatttaatgactgatccttcatcgcctatttttgac
ttctatcctgctgattttgagattgatatgaatggcaaacgatttgcttggcagggcgtt
gccaagttgccattcattgatgagaagaaattacttgctgcaactaggaagcttgaaggc
acattgacggcagaggagcaacttcggaacagtgtgatgctggacttgctttatgtcagc
catgaacatgccttagctccgcatattttcttgtactaccaaatttatcatcaattagct
ccgtttgaaaggcctgcttggtcaattgacacaaatgctagcagtggtggaatgaatgga
tatctttggctgagtgaaagaaatgggttgagacccatcgtattctcccctatcaatgga
ttgccagatattgagcataaccaagtcctaaatattacttatcttaatcctcatcgtagt
cacagacacatcccaaggcctcctgctggtgtagtcatgcccgaaaagattttaaaaccc
attgatatcaaacctttccctgttctatggcatgaagataatgcaggtcgaagatatgga
agggaaaggccacaagtacctggagcaatagcaggccctcaattgggagaagcggcccat
cgtcttgtcaagaacacccttaatatcaaattaaataatgcatcctatggcttgttggag
caaccttatcagaccagtcctaaccatcacgcaatgaacaggcaccgagcagctggatcc
tctggatatggaaaatgttatgtggacgacgcaagcagctattatgcacataatcatcat
catcagggaatgatgagcggcaggcttagatttccgatctcatctaatggtggacaaaat
gacagacagaattttaggatacaagataggtcgcagtacccagaacaattccataacatg
aaaaccgggttttctgctatgacaactaccatggtttcatgcaagccacctccaatgtta
ttgagaccgcctagctcaaggtcagcatccaatctacaacatgtgccgagcatggggcct
ccgataccccctccaaaatggattacgaatggaataaatagtagacatcatgatcctgct
catggcataacttctgataagcaaatgaagaaagtttaccaagttaaaacacgtcatgcc
caaaatatgccagagcaagcagagcgatag
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