Candidatus Pantoea carbekii US: BMSBPS_0151
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Entry
BMSBPS_0151 CDS
T03853
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pck
Candidatus Pantoea carbekii US
Pathway
pck03030
DNA replication
pck03410
Base excision repair
pck03420
Nucleotide excision repair
pck03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BMSBPS_0151
03410 Base excision repair
BMSBPS_0151
03420 Nucleotide excision repair
BMSBPS_0151
03430 Mismatch repair
BMSBPS_0151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pck03032
]
BMSBPS_0151
03400 DNA repair and recombination proteins [BR:
pck03400
]
BMSBPS_0151
Enzymes [BR:
pck01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BMSBPS_0151
DNA replication proteins [BR:
pck03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BMSBPS_0151
DNA repair and recombination proteins [BR:
pck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BMSBPS_0151
NER (nucleotide excision repair)
GGR (global genome repair) factors
BMSBPS_0151
MMR (mismatch excision repair)
DNA ligase
BMSBPS_0151
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BMSBPS_0151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
Ned1_M
Motif
Other DBs
NCBI-ProteinID:
AKC31976
LinkDB
All DBs
Position
complement(213349..215103)
Genome browser
AA seq
584 aa
AA seq
DB search
MKLIQQQMISLCTTLRHHEYLYYVMNTSEIPDEEYDRLIMQLRNLETIYPDLILPDSPTQ
RVGGKPLNAFEPVFHTIPMLSLNNTFDEDGFIIFNRRIQNRLRNNNITYCCELKLDGLAV
SLLYENGLLVRAATRGDGKIGENITANARTICAIPLRLQGDNIPVKLEIRGEVFMTETGF
KKMNQEAKRTGNKVFSNPRNAAAGALRQLDPYITAKRPLTFLSYNVGLIEGGGTMSSSHF
ERLKQIKAWGLPVSSRIGLARNVNEALNFYHQVAKDRFKLGFDIDGVVFKVDSINFQQVL
GVLSRAPKWAIAFKFPAQERITVVHNVDFQVGRTGAITPVARLEPIQVSGVIIANATLHN
FDEITRLKLRIGDKVVIRRVGEVIPQIVQVIESESSKGTREIIFPICCPVCGSSVKRVQG
ESVTRCTGGLVCSAQCKKALKHFVSRSAMNIQGIGDKIIEQLVDTKHVKTPADLFRLTLD
TLNVLDRIGPRSAQNILNAIEKSKYTTLTRFIYALGIHTVGKVTAFNLANYFGDIESIIH
ADFKTLVSVQDIGEIVARHIHHFMHEESNLVIIHDLIKNLGIHW
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgattcagcagcaaatgatctcgctatgtactacgttacgtcatcatgaatat
ctttattatgtaatgaatacgtctgaaattcctgatgaagaatatgatcgattaataatg
caattacgtaatctagaaacaatatatcctgatttaattctacctgattcaccgacacag
cgagtaggaggaaaaccacttaacgcttttgaacccgtattccatacaatacctatgttg
tctcttaataatacttttgatgaagatggtttcataatatttaatagacgtatacaaaat
cgattgagaaataataatattacttactgctgtgaacttaaattagacggtctagctgtt
agtttgctttacgaaaatggtttattagtacgtgcagcaacgcgaggtgatggtaaaatt
ggtgaaaatattacagctaatgcacgaacaatttgtgctattccgctacgcttacaaggt
gataatattccggtaaaacttgaaatacgaggtgaagtttttatgactgaaaccggtttt
aaaaaaatgaatcaggaagctaaacgcactggaaataaagttttttcaaatccgcgtaat
gcagcagctggtgcattacgtcagcttgatccatatattactgcgaaacgtcctcttacc
tttttgagctataatgttggcttaatagaaggaggcggaacaatgtcatctagtcatttt
gagcgattaaagcaaattaaggcatggggattaccagtgagcagtcgtattggtcttgcg
cgtaatgttaatgaagcattaaatttttatcatcaagtggcaaaagatcgatttaaacta
ggatttgatattgatggcgtagtattcaaagtagattccataaactttcagcaagttctt
ggtgtattatcacgagcaccaaaatgggcgatagcgtttaaatttcctgcacaagaacga
atcactgttgtacataatgttgattttcaggttggacgaactggtgctatcacacctgtt
gcacgtcttgaaccgatccaggtgtctggtgtcattattgcaaatgcaaccctacataat
tttgatgaaattactcgtctcaagctacgaattggtgataaagtagttattcgtcgagtg
ggtgaagtaattccccaaatcgttcaagttatagaatctgaatcttctaaaggcacacgt
gaaatcatctttccaatatgctgtccagtgtgtggatccagtgttaaaagagtacaagga
gaatcggtaacacgttgtacaggtgggttagtgtgtagtgcacagtgcaaaaaagcatta
aagcattttgtatcacgttctgctatgaatatacagggtataggtgataaaattattgag
cagttagtagatacaaagcatgttaaaacaccagctgatctgtttcgtttaactttagat
acactgaatgtattagatcgtataggacctagatcagcacaaaatatattgaatgctata
gaaaaatcaaaatacactacattaacgcgttttatatatgcgctgggaatccatacagta
ggaaaagtgacagcttttaacttagccaattattttggtgatatagaatcgatcatacat
gctgattttaaaacattagtctctgtacaagatattggtgagattgtagcaagacacata
catcattttatgcacgaagaaagcaatcttgttattattcatgatctcattaaaaatctt
ggtatccattggtaa
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