Procambarus clarkii (red swamp crayfish): 123760102
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Entry
123760102 CDS
T07930
Symbol
DNAlig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
123760102 (DNAlig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcla03400
]
123760102 (DNAlig4)
Enzymes [BR:
pcla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123760102 (DNAlig4)
DNA repair and recombination proteins [BR:
pcla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
123760102 (DNAlig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
PTCB-BRCT
DNA_ligase_IV
mRNA_cap_enzyme
YfeC-like
Motif
Other DBs
NCBI-GeneID:
123760102
NCBI-ProteinID:
XP_045601538
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All DBs
Position
16:31226599..31821364
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AA seq
919 aa
AA seq
DB search
MNCALVAPNPLHQQNPADHCYEATSRELKSKQPEMSGANCVASIIPWSQVCRMLDKVQSA
VRASKREMLLRFITHFRELLQKKRQQEPNTPDSFFPVLRILLPALDRSRGAYGVKERKLA
ELYIRILGLKKDGNDAQKLLHFRKPKSTSGGESGDFAEVAYYVLKNRCPAEGKMTLHDVD
IQLTSIAENYAAKNHDDVERSLLTMLRNMTATEQKWLIRVLLKDMRLGIGQGAIFNAWHP
DAKDFYDVNNNLEKVCKTLQDPRVRLHEIDVSLLSAFRPMLAERAVLEKVEVQMAHKTFY
AETKYDGERSQIHKKGNIYKYFSRNGFDFTNNFGGDRDCGLFTPHLHPLFPAHVKEVILD
GEMVGWSKIHNRIVSKGEHMDVKNLREEGDWQVCFCVFDIIYLNNQVLTNLPLSERLEKL
KTVINPLEGRVIFSAKTPVKSKEDVVKVLNEAIDNREEGIVLKDPDSVYRPASRKAGWIK
VKPEYVDSLVSELDLLIIGGYYGKGRHQGVLSHFLLGVAVSNEEPGGKPCEFHSFCRIGS
GYTASELSDLVDKLSPHTRVSQPRNVLVSREKPDVWIDPVKSYVVQVRAAEIVKSELYKT
EVTLRFPRVDKVRYDKPWYDTLTTTELDQLLKIASGKLATKHYTEGGEESLAKRKSPNKI
EQPSLPLHFRPADLSKVVKKDEIFSGLEMCVMGDSQEYTKQQLETLIVEHGGSFTQHPGQ
NTHCIITNTMPVRVKNYIHSGKHNIVRPSWIEACSKNGRLLPWGPLDVIHVRENEKEQMK
DLFDEFGDSYTEPADGKSIKRIMDNMKKESWRSPSVDEMCELDEKLCEPDDTRALFRRIS
AFFDNYEDQELAALSLRLHGGSITTTLSTATHVVTQSESNHRPSEMHRQHLVTSDWIYAC
IEKGKLEEERYFMPKMVEL
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtgctttagttgcccctaaccctctacatcaacaaaaccctgctgaccattgt
tacgaagctacatctcgggaattgaagagtaaacagccagagatgtctggtgctaattgt
gtagcatccatcataccatggtcacaagtttgccgcatgcttgacaaggtccagtctgct
gtgcgagcctccaagagggagatgctgctaagatttattactcatttccgagagcttctt
cagaagaagcggcagcaggaaccaaatacaccggatagcttcttccctgtattgcgaata
ttgcttccagcactggaccgatcaagaggggcttatggtgtgaaagaacggaagctggca
gagttatatatccgtatacttggtctgaagaaggatggcaatgatgctcagaaattattg
cattttcgaaagcccaagtcaacatctggaggtgaatctggagattttgcagaggtagca
tactatgttttgaagaaccgttgtcctgctgagggaaaaatgaccttgcatgatgttgac
atacaattgacatcaattgcagaaaactatgctgctaagaaccatgatgacgttgagcgc
tcacttctgacaatgctacgtaatatgacggctacagaacagaagtggctgatacgtgtt
ctactaaaggatatgaggcttggcattggtcagggtgctatctttaatgcctggcaccca
gatgcaaaggatttttatgatgttaataacaaccttgaaaaggtttgtaaaactctgcaa
gatcccagggtaaggctccatgaaattgacgtttccctattatctgctttccgtccaatg
cttgcagaacgggcagtcctagagaaagtggaggtccaaatggctcacaagacattttat
gcagaaactaaatatgatggggaaaggtcacaaatccataaaaagggaaatatttacaaa
tatttttcaagaaatggttttgattttacaaataattttggtggtgatagggactgtggt
cttttcacaccacacctccatccattgtttcctgctcatgtgaaggaagtcatactagat
ggagagatggtgggctggagcaaaatacacaacagaattgttagcaaaggtgaacacatg
gatgtgaagaacttgcgagaggaaggcgattggcaagtctgtttttgtgtctttgacatt
atttatctgaataatcaggtattgactaatctgccactttctgaacgtctggagaaactt
aaaacagtaatcaaccccttggagggccgagttatcttttctgcaaaaacccctgttaaa
tccaaagaagatgtggttaaagttttgaatgaagccatagacaacagagaagagggcatt
gtgttgaaagatccagactctgtgtatcgaccagcatcacgcaaagctggatggattaaa
gtcaagcctgagtatgttgactcccttgtgtcagagctcgacttgcttatcattggaggc
tactatggcaagggacgacaccaaggagtgctctcacattttctactcggagttgctgtc
tcaaatgaagagcctggtgggaagccgtgtgaattccattctttttgccgcattggatca
ggctacacagcctcagagcttagtgatttagtggacaaacttagtccccataccagagtt
agccaacctcgaaatgttcttgtatccagagaaaagcccgatgtatggattgatcctgtc
aagtcttacgttgtacaggtgagagctgcagaaattgtgaagagtgagttgtacaaaaca
gaagtgactttaaggtttccaagagttgacaaagtacgttacgacaagccttggtatgac
acactcaccacaacagagttagaccaacttttaaagatagctagtggaaaattggccaca
aaacactataccgagggtggtgaggagtcattagccaagcgtaaaagcccaaacaaaata
gagcaaccctcattgcccttgcatttcagacccgcagatctatcaaaagtggtaaagaaa
gatgaaatattttctggattggagatgtgtgtgatgggggatagtcaggaatacacgaag
cagcaactagagacattaatagttgaacatggaggctccttcacacaacacccaggacag
aacacacactgcatcattacaaataccatgcctgttcgtgtgaagaactatattcactcg
ggtaaacacaacattgttcgaccttcatggattgaggcatgttctaagaacggtcgtttg
ctaccttggggtcccttggatgttatacatgttagggagaatgaaaaggagcaaatgaaa
gatctgtttgatgagtttggagatagctacactgaaccagcagatgggaagagcattaaa
agaattatggacaatatgaagaaagagtcatggagatccccatcagtagatgagatgtgt
gaactggatgaaaaactttgtgaaccagatgatactcgagctctcttcaggcgcatttca
gctttctttgacaattatgaagaccaggagcttgcagcgctgtccctgcgccttcatggt
gggtcaatcactactactcttagcactgccactcatgtggtgacacagagtgagagcaac
catcgtccaagtgagatgcacagacagcacttggtgacttcagactggatttatgcatgc
attgagaaaggcaagctagaggaggaaagatacttcatgcctaagatggttgaactctaa
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