Procambarus clarkii (red swamp crayfish): 123764756
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Entry
123764756 CDS
T07930
Name
(RefSeq) agrin
KO
K06254
agrin
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04512
ECM-receptor interaction
pcla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123764756
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123764756
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pcla00535
]
123764756
Proteoglycans [BR:
pcla00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123764756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Kazal_2
Kazal_1
EGF_laminin
EGF
Kazal_CFAI
Laminin_G_3
hEGF
Motif
Other DBs
NCBI-GeneID:
123764756
NCBI-ProteinID:
XP_069158694
LinkDB
All DBs
Position
48:10022182..10273468
Genome browser
AA seq
1518 aa
AA seq
DB search
MCNPCGHVVCQAGQVCLVDDARVPRCLCNSTCLSSLSPVCANDGTTYSNECVMNFEACSR
RQVLSVLYRGECSSGVNPCGAVRCGTGQGCVVNQYGVATCQCRTWCPPVVTPVCGTDGVT
YDSKCHLEKDACVRQRAIAVAFVGSCDSGGPCDGYKCEFGGVCVERYGQAECECGECGGE
YQPVCGGDRRTYHSACHLRRHVCRTTTVVDLLHPGPCDACKGVACGEFGVCVVDPEGIGR
CSCPTNCTQALGGEVCGSDGQTYASECHLQVAACSSQRHLSVAHKGNCDLCLDVHCKYGA
RCEGGRCICPTDCPDKREPVCGSDRFTYSNECVMRKVACEKNEDVNYLFFGECDEIGGIV
TDVIYPTPLPPTSPEDPCHSHTCLAGAECQADGEGRARCVCDFYCSPPPRYEPVCGSDKE
FYESDCLMRLHACNIQVELSVRPIHECAAAQRLRACNGTSPLINPSTGEDLYCGEGGTIC
PPGTYCHRQHDFAKCCRDYSIRIAVIEAPVPRDCHQTDWGCCEDGLNIATGAEREGCPES
CRCHRLGSVREACDAVTGVCECRPGVGGKNCDRCLSGYFGLQRVSEGAIGCTPCGCSVYG
SLRLDCEQMTGECECKAGVTGHRCTLCPRGQVLRPEGCVYEDLLVPQPTTCDLLQCHFGG
RCHEKGGLASCACTHHCLPSGVGGLLAVCGSDRTTYASECELKYQSCVKQADIVVVAFGL
CTESWTDAPVRRSTAEDGWGTEEWAWPGRGLTEHHALATRRHVDAAHFTRAHSPNSAHSN
MIIESPTHVVTPKTALDSEEQGPIFPLSAATKLPYRVPAFSGTSYIQLMPWSVPTKVQLE
VEFVAHEADGVLLYVQETLGGVGDFLALVLNDGHLEARLDLGNGQVSLRSPKPIDLFTKT
LVSVRTYNRDALLQVGVGEAISARSEGVHRAMDIHAPLYVGGVPALTPRVLANLGVGRGF
SGCIHSLKVGQRGLDLVWGRSGSVGHAHNVSDCRPSPCAAHPCINGGTCRPRPHSQSFVC
DCPTAYTGSRCEVEVSEGCRRLQCPPGTACQRVPASTTLHCVSELGREETWPIADLEGRG
YLVLPRLEERLQEVSLEVWFLSRSPHGMLLYQAEGPAHRGDFVSLNLASGYLQFRLDVGP
GVINLTSSETVEVGAWHRVKAWWEGGRASLQVDQAPPVTCPAPAHPHTLTLNTPLYLGGF
RLWYLVNRESGILVGLDGALQKLLINGVAYSRLPEAATEQRGVSLYMGPPCHPNPCSNGG
LCVPLLANFSCRCPVMFVGRLCHKSLAGVSLDQPIHLDGSTAVLYPGQLSLKSNRSGLHV
PWSHPDYDYLQYDEVEQQLLDQVTHSDDLAHDRGRGRPHGVLEVSFRADSSSGLLLWAGR
GRSGRSRAGDYLALALVDGLPQLALNLGRSRKPFILTATGAVDDGSWHVVRVTRRWRRAL
LKVDNHRPVRGKAARGATYLHTDGDLWLGGHRWVPPHLAPAYHWGFRGCVDRLLVDGREV
HLVHHAASPTLQFCHSLS
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaatccgtgtggtcacgtggtgtgccaggcggggcaggtgtgcctggtggacgat
gccagggtgccaaggtgcctctgtaactccacctgtctctcctccctgtcccccgtctgt
gccaacgacggcaccacgtacagcaacgagtgtgttatgaacttcgaggcttgcagccga
cgacaagttctgagtgttctctaccggggcgagtgttcttcaggtgtgaacccgtgcggc
gctgtcaggtgtgggactggccagggatgtgtagtgaaccagtacggggtggccacgtgc
cagtgtcgcacgtggtgtcctccggtggtgacacctgtgtgtggcaccgacggtgtcacc
tacgacagcaagtgtcacctggagaaggacgcgtgtgtcaggcagagggccatcgctgtc
gcgttcgtcggatcatgcgattcaggtgggccgtgtgatggatacaagtgtgagtttggg
ggagtgtgtgtggagcggtacggacaggcggagtgtgagtgtggggagtgtggaggagag
taccagccagtgtgtgggggagacaggaggacctaccactctgcctgtcacctgcgtcga
cacgtctgtcgcaccaccaccgtcgtcgacctgctgcacccgggtccctgcgacgcatgt
aagggcgtggcgtgcggggagtttggggtatgcgtggtggaccccgaaggcatcggccgc
tgttcctgccccaccaactgtacccaggcactgggcggggaggtgtgtggcagtgatggt
cagacttacgcctcagagtgccaccttcaggtcgctgcctgcagcagccagaggcacctc
agcgtcgctcacaagggaaactgcgacctgtgtcttgacgtgcattgcaagtacggtgca
aggtgtgagggaggtcgttgcatctgtcccaccgactgccctgacaagcgggagcccgtc
tgcggttcagatcgcttcacctacagcaacgagtgtgtcatgcgcaaggtcgcttgtgaa
aagaacgaggatgtgaactacttgttcttcggggagtgtgatgagattgggggcatcgtt
acagacgtgatctatccgactcctctaccacctacgagccctgaggacccgtgccactca
cacacgtgcctcgcgggggctgagtgccaggcagacggtgaggggagagccaggtgtgta
tgcgacttctactgctcccctcccccgcgctacgagcccgtctgcggtagtgacaaggag
ttctacgagtcggattgcctgatgcgcctccacgcctgtaatattcaggtggagctgtcc
gtacgccccatccacgagtgcgctgccgcccagcgactccgagcatgtaatggcacctct
ccactgatcaacccgtcgacaggagaggacctatactgtggggagggcggcactatctgc
cccccaggcacctactgccacaggcaacacgactttgccaagtgctgccgggattactcc
atcaggatcgcagtgatcgaggccccagtgccacgggactgccaccagaccgactggggt
tgctgtgaggacggtctcaacattgccacgggagctgagagggagggctgccccgagtcc
tgtcgctgtcacagactagggtcagtgcgggaggcgtgcgacgcggtgacgggcgtgtgt
gagtgtcggccaggcgtgggcggcaagaattgtgaccgctgtctctccggatacttcggc
cttcagagggtctctgaaggagccatcggatgcaccccgtgcgggtgctcagtatacggg
tcgctgcgtttggactgcgaacagatgactggagagtgtgagtgcaaggctggagtgact
ggccatcgctgcactctctgcccgcgaggacaggtcctccgtcctgaagggtgcgtctat
gaggacctgctggtgccacagcccaccacctgcgacctactccagtgccacttcggaggt
cggtgccacgagaagggaggcttagcgtcctgcgcctgtacccaccactgtcttccgagt
ggtgttggcgggttgctggcggtgtgtgggtcggacaggacgacgtacgcctccgagtgc
gagctcaagtaccagtcgtgcgtcaagcaggcggatatcgtcgtggtcgccttcgggttg
tgcacagagtcgtggacggacgccccggtccgccgctccacagctgaggatgggtggggc
actgaggaatgggcgtggccagggcgaggcctcacagaacaccacgccctcgccaccagg
agacacgttgacgccgcccacttcacccgcgcccattccccgaactccgcccactccaac
atgatcatcgagtccccgacgcacgtggtgacgccgaagacggctctggactcggaggag
caaggccctatcttcccgctctccgcggccaccaagcttccctacagagtgccagccttc
tcaggcacctcctacatacagctgatgccgtggtctgtgccgacgaaggtgcagctggag
gtggagtttgtcgctcacgaagccgacggcgtcttgctgtacgtccaggagactcttgga
ggcgtcggcgacttcttggcgctcgttctgaacgacggacacctggaggcccgcctcgac
ctgggcaacggacaggtcagcctcaggtcaccaaagcccattgacctctttaccaagact
ttggtcagcgtccggacttacaacagggatgccttgctgcaagtgggcgtgggggaggcc
atatccgcccgttccgagggcgtgcaccgcgccatggacatccacgccccgctgtacgtg
ggcggcgtgcccgccctcactcccagggtcctcgccaacctgggcgtggggaggggcttc
tccggctgcatacactccctcaaagtcggccaacgaggacttgacttggtctggggacgg
tcgggaagcgtcggacacgcccacaatgtgagtgactgccgcccatcgccctgcgccgcc
cacccctgcatcaatgggggcacctgccgcccacgcccacacagccagagcttcgtatgt
gactgcccgacggcgtacacaggcagccgctgtgaggtggaggtcagtgagggctgtcga
cgtctccagtgtcctcccggcactgcctgccagagagtgccagcctccaccaccctccac
tgtgtctcagagctggggagagaggagacctggccaatagcggacctggagggccgaggc
tacctggtgctgccgcgcctggaggagcggctgcaagaggtgtccctggaggtgtggttc
ctgagtcgctccccgcacgggatgctgctctaccaggcggagggtccggcccaccgcggc
gacttcgtcagtctcaatcttgctagtggttacctccagttccgcctcgatgtcggccct
ggtgtcattaatctaacgtcgtctgagacggtggaggtcggggcgtggcaccgggtcaag
gcctggtgggagggtggtcgcgcctccttacaggtagaccaggccccacctgtcacctgt
ccggctcctgcccacccccacacactcaccctcaacacccccctctacctggggggcttc
agactctggtacctggtgaaccgggagtcgggcatcctggtggggttggacggagcgctg
cagaaactgcttatcaacggcgtggcgtacagcagactgccggaggcggcaacggagcag
aggggcgtgtccctctacatggggcctccgtgtcaccccaacccctgcagcaacggcggg
ctgtgcgtgcccctgctggctaatttctcctgccggtgtccggtcatgttcgtcgggaga
ctctgtcataaaagcctagctggagtaagtcttgaccagcctatacacttggatgggtcc
acggcggttctctatccaggacagctgtcactcaagtcaaaccggagtggccttcatgtg
ccctggagccacccagactatgactacctccagtatgatgaggtcgagcaacagctcttg
gaccaggttacccactccgacgacctggctcacgacagagggcgtgggcggcctcatggc
gtcctggaggtgagcttccgggctgacagtagctccgggctgctgctgtgggcgggacgt
gggcggagtgggcgtagcagggcgggggattacctcgccttggccctcgttgacggcctt
ccacagctggccctcaacctcggccgctctcgcaagccgtttatcctgacagctacgggg
gctgttgatgacggctcgtggcacgtggtgagggtgaccaggcggtggaggcgagcactg
ctgaaggtagacaaccaccggcctgtgagaggcaaggctgcgcgaggcgccacctacctc
cacaccgacggtgacctctggttaggtgggcacagatgggtgccgccccacctggctccc
gcctaccactgggggttcagagggtgtgtggaccggctgttggtggatggtcgcgaggtc
catttggtccaccacgctgcctcgcccactctccagttctgccactcactcagctaa
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