Paraprevotella clara: PC1C4_23230
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Entry
PC1C4_23230 CDS
T08732
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pclr
Paraprevotella clara
Pathway
pclr03030
DNA replication
pclr03410
Base excision repair
pclr03420
Nucleotide excision repair
pclr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pclr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PC1C4_23230 (ligA)
03410 Base excision repair
PC1C4_23230 (ligA)
03420 Nucleotide excision repair
PC1C4_23230 (ligA)
03430 Mismatch repair
PC1C4_23230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pclr03032
]
PC1C4_23230 (ligA)
03400 DNA repair and recombination proteins [BR:
pclr03400
]
PC1C4_23230 (ligA)
Enzymes [BR:
pclr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PC1C4_23230 (ligA)
DNA replication proteins [BR:
pclr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PC1C4_23230 (ligA)
DNA repair and recombination proteins [BR:
pclr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PC1C4_23230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PC1C4_23230 (ligA)
MMR (mismatch excision repair)
DNA ligase
PC1C4_23230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PC1C4_23230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
UPF0758_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BDI75601
LinkDB
All DBs
Position
complement(3198759..3200771)
Genome browser
AA seq
670 aa
AA seq
DB search
MQMEVKEQIERLRNELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEFDDPDSPT
RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGLEGEPFEICCEMKYDGLS
ISLTYEHGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMPWAS
FETLNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYLLGEHIPFDGHYEN
LQAARSWGFKISGGMRKVTTLQDIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQRALGY
TAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATLHNAD
VMEQLDLHIGDMVYVEKGGEIIPKIVGVDADARGPETGPKAEFITRCPECGAELVRYEGE
AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVDDYYRRGLIRDVADLYDIQVQQ
INGEDGTREKSAQKIVRSIADSVEVPFERVVFALGIRFVGEIAAKALARHFKSMDALASA
SLEDMLQINGIGVVIAESVIRYFANEANRDLVRRLREKGVRMELSDEELSSHSDKLSGQS
IVVSGVFSLHSRDEYKAMIEQHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILS
EEEFLKKIES
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatggaagtaaaggaacagatagagcggcttcgcaatgaattgcaccgccacaac
tataattattatgtgttgaacgccccggaaatttccgaccaagagtttgaccgcatgatg
cgggagttgcaagacctcgaggcggcccatcccgaatttgacgacccggactcgccgacg
cggcgcgtggggagtgacctgaatcaggagttcgtgcaggtgccccaccgctatcccatg
ttgtcgttgtccaatacgtacaacaagcaagaggtggccgacttttatgaacgcgtccgt
tccggtttggaaggcgagccgttcgagatttgctgtgaaatgaaatacgacgggctttcc
atctcgctgacctacgagcacgggcggttggtgcgtgccgtgacgcggggcgacggggta
cagggcgacgacgtgacggaaaacgtcaagaccatccgttgcattccgcttcgcctgaac
gggaacggttaccccgaagagtttgaaatccgtggggaaatcctgatgccgtgggcgagc
ttcgagacattgaaccgcgaacgcgaagaacgcgaagaaccgcttttcgccaatccgcgt
aatgcggcttcggggacgctgaaaagcaaaaactcagcggtggtggcgcaacgcaagctc
gatgcttacttatattaccttttgggagaacacattccttttgacgggcattatgaaaat
ttgcaggcggcccgctcatggggattcaagatatccggggggatgaggaaagtaactacg
ctccaggacatttatgatttcatagattattgggacgtggagcgcaagaacctgcctgtg
gctacggacggcatcgtgctgaaggtcaactcccagaggcagcaacgtgcgttgggctat
accgccaaaagccctcgttgggccatcgcttataagtttcaggcggagcgtgcccgtacg
cgcctgaatgctgtgaccttccaggtcggacgtaccggaacggtgacgccggtggccaat
atggatccggtgcagttggccggtacggtcgtgcggcgtgccacgctgcacaatgccgac
gtgatggagcagttggatttgcacatcggggacatggtatatgtggaaaaaggaggggaa
atcattcccaaaatcgtaggtgtggacgccgatgcgcggggaccggaaacgggaccaaaa
gccgagttcatcacccgttgtccggaatgcggggccgaactggtgcgttacgagggagaa
gccgcatggtattgccccaacgacacggcttgtccgccgcaaatcaaggggcgcatagag
cattacatcagtcgcagggccatgaacatagacagtctggggcccgaaaccgtggacgat
tactaccgccgcggcttgatacgcgatgtggccgacctgtacgatatacaggtgcagcag
attaacggcgaggacggcacgcgcgagaaatccgcgcaaaagatagtccgctcgattgcc
gactccgtagaagttcctttcgaacgcgtggtgtttgccttgggcatacgttttgtcggt
gaaattgcggctaaagccttggcacgccatttcaagtcgatggacgcgctggcctcggca
tcgttggaggacatgttgcagatcaacggaatcggtgtggtgatagccgagagcgtgatc
cgctattttgcaaacgaagccaaccgcgatttggtgcgccgtttgcgggaaaaaggagtc
cggatggagctttccgacgaagaattgagcagccattccgacaagttatccgggcagagt
attgtggtgagcggggtgttctcgcttcattcgcgcgacgaatataaagccatgatagaa
cagcacggtggaaaaaatgtgggcagcatctcttcgaagacttctttcgtgctggccgga
gccaacatgggaccggccaaactggagaaagccggtaaattgggtatccctatcctctcg
gaagaagagttcttgaaaaagatagaatcgtga
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integrated database retrieval system
