Phanerochaete carnosa: PHACADRAFT_178551
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Entry
PHACADRAFT_178551 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pco
Phanerochaete carnosa
Pathway
pco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PHACADRAFT_178551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pco03400
]
PHACADRAFT_178551
Enzymes [BR:
pco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PHACADRAFT_178551
DNA repair and recombination proteins [BR:
pco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PHACADRAFT_178551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
18909855
NCBI-ProteinID:
XP_007401122
JGI:
Phaca1_178551
UniProt:
K5VTN7
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MTDASSPSQVPFQLWSTVTFTRFDSFVFLCEAFASVEPKNATNTKNQKKNQESFCVKTLR
NWTKALHERYSPLPDGTAATFFRLFFPEEDVSRKYGMQETRLAGYIADIFGVSTNRDSRG
ASLRKWGGSDATGCLGREVQSLMEGTNDQQETRSISDISRLLTELASTSAYSSSSVRVPA
TSRRKPREILRNLYASASAMSASVITQIILKDLRPILYPLKETHYTAQLLQYNSKAVRML
TKEQAMKVWDPDGKLSQAYRVCASIEEAVAAFENPEEFMRPRVGVPIPIPKCIKGRGCKD
SLNSLRQSSNVWAETKYDGERAQIHVEMDHGGDSKITIFSKSKRDSTVDRFGVHSIIREA
LSLPGSSDGGGIPSTVPHIKHNVVIEAEMVAYSNALGKVDEFWRIRSLIASTALGVRGAS
YKKTNPTEDWSQSSLISDASDEGARHLALVFFDVLVVDSESLLWRPYSYRRALLESLIVR
RPGYAMLAERVPIPMHSPKEADEALRRAFAKLQADREEGAVLKADESRYNDWKLRWVKLK
ADYIPGHGDCVDLVLLGAGWDKERARELLVGPSVYTTFYIGAVVDVVASETASSEKPGFQ
VIFTCSYGLSREQLEELNFFIKSTDPVAYSAAGSKYASILPYSFTLNLGLAPPAVMLREP
ILAEFYGAGFTKAPRSKYYELRFPRMTKFHRTSERSWRDGISLDEFQCIAREAVGLDRPN
KDIDDWCKGLWGKLQSPGARCPAKRKAREEEWLDKLEKADGKLKLKARRLNLPGPAETMM
MENVRHEEPAAAAPANKMRAFGSVTNILPTPLAQANKELSANVDPPSTKPIPECPRQLQF
GPDEDSVKTPNVMSSVAREHAQQERVVENPTPAVLRTEVAVTPPSSNGAVVTTSTQQPFP
ATPCTIRQFLQHAAVYLARDTRLPRPSWRAPSHTVVPHGHQLHTLEAMLIACTWGSINVC
DWARFGVVFVDDSDATHAWMDVVARPLLEKRTALLRKGWDFEKPIFILGLSMLHVNKLNE
EVAIAGKAICRFG
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgcatcctctccgtcccaggtcccctttcagttgtggtccaccgtcacgttt
acacgctttgatagtttcgtgttcttgtgcgaggcgttcgcatccgtcgagcccaagaat
gccacgaacaccaagaaccagaagaagaaccaagaatcgttctgtgtaaagaccctgaga
aattggacgaaagctctgcacgagcgctattcgccgctaccagatggaaccgcggccaca
ttcttccggctgttctttccggaagaggacgtatcgagaaagtatggcatgcaagagacg
cgcctcgcgggatacatagcagacatctttggtgtatctaccaaccgcgattctcgaggc
gcgtctctacgaaagtggggcgggtcagacgccactggttgtcttggacgcgaggtccag
tcgctcatggaaggcaccaatgaccagcaggaaacgcgctccataagcgatattagcaga
cttctcaccgagctggcttcaacctctgcttactcctcttcgtcagtccgcgtaccagca
acgtcgcgtcgcaagccacgcgaaattttacgcaacttatatgcatcagcatcagccatg
tctgcatccgtaatcacacagattattctcaaagatttgcgtccgatattatacccgctc
aaggagacgcattacaccgcacagctcctgcaatacaactccaaagccgtacgtatgctg
acaaaggagcaagctatgaaagtatgggacccagacggcaaactttctcaagcgtaccgc
gtgtgtgcatcaattgaagaggccgtggcagcgttcgagaatcccgaggaattcatgcgg
cccagggttggcgtgcccattccaattccgaaatgcatcaaaggcagggggtgtaaggac
tctctcaacagcctcaggcaatcctcgaatgtatgggctgagaccaagtatgacggagaa
cgagcgcagatccacgtagaaatggatcacggcggtgactcaaagattacaatctttagc
aagagcaagcgagattcgactgtggatcgttttggtgtgcattcgattatccgggaagct
ttaagccttccgggttcgtctgatgggggtggtatcccatcgactgttccacacatcaaa
cacaacgtggttattgaggccgaaatggtcgcatactctaatgcgctcggaaaggtcgac
gaattctggagaatacgaagtctcattgcatcaaccgctctcggcgtgcgaggtgcatcc
tacaagaagacgaatccgacggaagactggtcccaatcctcgctcatttctgacgcctca
gacgaaggcgcacgacaccttgcgctcgtcttcttcgacgttcttgtcgtcgactccgag
tccctcctctggcggccgtattcctaccgtcgtgcgctgctcgagtcgcttatcgtgcgg
cgtccagggtacgcgatgctcgcggagcgcgtgccaatcccgatgcattctccaaaagag
gcggacgaggcactaaggagggcattcgcgaagttacaagcggaccgtgaggagggcgcc
gtcctcaaagcggacgagagcaggtataacgattggaagctgaggtgggtgaagctgaag
gcagactacattcccgggcatggcgactgtgtagacctcgttctacttggcgctggttgg
gataaggagcgtgcgcgtgaactgctcgttggcccatctgtttacacgactttctacatt
ggcgctgtcgttgatgtggtggcgtcagaaactgcgtcctcagagaagccgggcttccaa
gtcatcttcacctgctcatatggtctgagcagagaacaacttgaagagctgaacttcttt
atcaagagcactgatccggtagcctactctgcagctggcagcaagtatgcctcaatactg
ccgtattcgttcacattgaatctcggcttggcaccaccggctgtcatgcttcgagaaccc
attctcgcggagttctatggagccgggttcacgaaggcacctcgtagcaagtactatgag
cttcgcttccctcgcatgaccaaatttcaccgcacaagcgagcgatcctggcgagatggc
attagtctcgacgaattccagtgtattgcacgtgaggctgttggtctggaccgcccaaac
aaggatatcgacgactggtgcaaaggtctctggggcaagttgcaatctccaggggcgcgc
tgtcccgcgaagcggaaggcgcgcgaggaagaatggcttgacaagcttgagaaagcagat
gggaagctgaagctcaaggcgcgaaggctaaaccttcctgggccagctgaaaccatgatg
atggagaatgtgcgacacgaagaaccggcagcggcggcacccgcgaataagatgagggcg
tttgggtcggtgacgaacatcttgcccacgccactcgctcaagcgaacaaagagctttct
gcaaacgttgacccaccatctaccaagccaatccctgagtgtccaagacaacttcagttc
ggacccgacgaagactctgtgaagacaccaaacgtaatgtcttccgtcgctcgggaacat
gcccagcaagaacgtgtcgtagagaaccctacacctgcagttttgcggacggaggtagcg
gtgacacctcccagctccaatggagcagtagtcaccacgtcaacgcaacagcccttcccc
gccacgccctgtaccatccgccagttcctgcagcacgcagcagtctacctcgcgcgagac
acccgcctgccacgcccaagctggcgcgcgccctcgcacaccgtcgttccgcacggtcac
cagctgcataccctcgaagccatgctgatagcctgcacctggggctcaatcaacgtgtgc
gattgggcgcggtttggcgtcgtgttcgtcgacgactctgacgccacccacgcgtggatg
gacgtcgtggcacgaccgctgttggagaagaggacggcgctgctgcgtaaagggtgggat
ttcgagaagccaatttttattttggggctgagtatgctccatgtgaataagctgaacgag
gaggttgcaattgcggggaaggcgatttgtcggttcggttga
DBGET
integrated database retrieval system
