Phanerochaete carnosa: PHACADRAFT_178599
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Entry
PHACADRAFT_178599 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pco
Phanerochaete carnosa
Pathway
pco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PHACADRAFT_178599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pco03400
]
PHACADRAFT_178599
Enzymes [BR:
pco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PHACADRAFT_178599
DNA repair and recombination proteins [BR:
pco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PHACADRAFT_178599
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
BRCT
LIG3_BRCT
PTCB-BRCT
DUF7026
Motif
Other DBs
NCBI-GeneID:
18909857
NCBI-ProteinID:
XP_007401169
JGI:
Phaca1_178599
UniProt:
K5VFN0
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MQQATPAPSYHRPSPPPGASTVHSTATADDHPVEYPVPPQNDGSAPFYVLSALFDRLQNE
RKPDKRRRLLATWFNHWREDKGYDLYPILRLILPQKDRERAVYGLKEKALAKIYIRMIPL
QKQDRDAIRLLNWKKPADKEASAGDFPTVLYEVISKRSSVIQGSLSVEDVNDVLDELAKN
GGKSEPQVKIMTRVYNSMTAEEQRWLVRIILKDMVISVKETTVFSVFHPDAHDLFNTCSD
LKKVAWELWDPQRRLNEEEKTVHLFRAFAPMLCKRPTRRIEESVKDMGGSKFVIEEKLDG
ERLQLHKRGNEYFYCSRKGKDYTYLYGKHVGSGSLTPFIEDAFDPRVEEIILDGEMLVWD
PVSERNLPFGTLKTAAGDKTNKELRPRPCFKVFDLLHLNGQSLLQKSLKFRKNNLRACLS
EVKGRLEFVTEFEGKTAQDVRQYMEIIMNNRGEGLIMKHPGSEYVLNGRNKDWIKVKPEY
MDNMGETVDVLVVAGCYGTGRRSGGVSTLVCAVLDDQRAAGDDDGMKYRTFVRIGSGLTF
ADYVWIRQKPWKEWNPKQPPPWLLTAKRGQEDKGDAYLKPEDSFIIKVKAAEITPTDQYH
IGYTMRFPRAMMIREDLGIEDCMTASAVFESVRSEKKRKAESGGGGSKKKRKATAKKPTV
LPHFNVAEDLKDVKVEGELFKEFTLLVASDPKSRTGESDRKELMKLIKANGGKFCQVINN
RQGENTMAVYDGATIPYDIKMIVDRGTHDIVKPEWIRDSVARDELAPLTKKYLFFATEAR
RNTEEYSLAEGADVEMEEAVAGAPPSPTASSETEPETEELTRARDEPKEEADPTLSEWFK
ISAKDVHRGKVAAQEEEVESETEPESDNEDVRDKNAEIDELADEMGDDWFEVSALGSAEP
DISESSTQASELAKMGETEEAMEYDQELIFKHLCFYLDSPSNARTNGMVVKAKGAEDLDV
HFNELARKIRANGGKVTDSLDETKLTHVVLDKRDTSRRAELNKRTSKPKRRHLVVTDFIE
ACLEEDTLLDEDSFAP
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaagcaactccggcaccgtcatatcatcgcccgtcgccacctccaggagcaagc
acggtgcattctacggccaccgcagatgaccatccagtcgaataccccgtgcccccgcag
aacgacgggagcgcgcctttctatgtgctgtctgccctgttcgacagactgcagaatgaa
cggaaacctgacaagcggcgaaggctcctcgccacgtggttcaatcactggcgggaagac
aagggatacgacttgtaccccattttaaggctcattttgccccagaaagatcgagagcgt
gcagtctacgggcttaaggagaaggctctggctaagatttacatcaggatgattcctttg
cagaaacaagaccgggatgctatcaggcttctgaactggaaaaaacccgcagacaaggag
gcttcggcgggagactttccaactgtcctctatgaggtcatcagcaaacggtcttctgtc
atacagggctcgctctctgtcgaggacgtgaacgatgttcttgacgagcttgccaagaac
gggggcaaatctgaaccacaagtgaagatcatgacccgagtctataacagcatgactgca
gaagaacaacgatggttagtccgaattatcctcaaagacatggtaatttcagtaaaggaa
acgaccgtgttctccgtattccatcccgatgctcatgatctcttcaatacctgctctgat
ctcaaaaaagttgcatgggaattgtgggatccgcagcgcaggcttaatgaagaggaaaaa
accgttcatctctttcgtgcgtttgcacctatgctctgcaagcgtccaaccaggcgcatc
gaagagtctgtcaaagacatgggcggaagcaagttcgtcatcgaggagaagctcgatggc
gagcgcttgcagctacacaaacgcggtaatgagtatttctactgttccaggaaaggcaag
gattacacctacttgtacggcaaacacgtcggatcgggtagtttgacccctttcattgag
gacgcatttgatccaagagtagaagaaatcatcttagatggggagatgctcgtatgggac
ccggtgtctgagcgaaatcttcccttcggaacgctgaagacggctgcgggagacaagacc
aataaagagttacgcccgcgaccatgcttcaaagtcttcgatctactacatttgaatggg
cagagtcttctgcagaagtccctaaaattccggaaaaacaaccttcgtgcatgtctgagc
gaagtcaagggtcgcctggagttcgtcacggaatttgaaggcaagacggcacaagacgtc
cggcaatatatggagattatcatgaacaatcgtggcgaggggctcatcatgaaacatccc
ggctccgaatacgtccttaacggacgaaacaaggattggatcaaagtcaaacctgagtac
atggataacatgggtgaaaccgtcgacgtgctggttgttgccggctgctacggtacgggt
cgacgctctggcggcgtttctactctcgtgtgcgcggtgctcgatgatcagcgagctgcg
ggagatgatgatggcatgaagtatcgcaccttcgttcgcattggatctggcctaacgttt
gcggattacgtctggattcgtcagaaaccatggaaggaatggaacccaaagcagccacct
ccctggctgctgactgcgaagaggggtcaggaagataagggcgatgcctatctaaagccg
gaagattcattcattatcaaggtcaaggccgcagagatcactcccacggatcaataccac
ataggctataccatgcgctttcctcgcgctatgatgattcgtgaagacctcggtatcgag
gactgcatgactgctagtgcggtcttcgagagtgtccgctccgaaaagaagcggaaagca
gaaagtgggggtgggggttcaaagaagaagcgcaaggcaaccgctaagaagcctactgta
ttgcctcacttcaacgtcgccgaggatctgaaagacgtcaaggtagaaggcgagctgttc
aaggagtttactttattggtggcgtccgatccgaagtccagaacaggtgaaagtgacaga
aaggagctcatgaaactgatcaaggcgaatggcggcaaattttgtcaagttatcaataac
cggcagggagagaacacgatggctgtgtacgatggtgcgactattccctacgacatcaag
atgattgtggacaggggaactcatgacatcgtcaaacctgaatggatcagagacagcgtt
gcaagggacgagttggcacctctaacgaagaagtatctcttcttcgctacggaagcccgt
cggaatactgaggaatatagcctggcggaaggtgctgacgttgagatggaggaagcagtc
gcaggtgctcctccatcaccgactgcgtcatccgagacagaaccggagacggaggagctg
acgcgtgctcgggatgagccaaaagaggaagccgatcccaccttgtccgagtggttcaag
atcagtgcaaaggacgtacataggggaaaggtggcagcacaagaggaagaagttgagagc
gagaccgagccagagtcggacaatgaagatgtgcgcgacaaaaacgctgagattgacgaa
ttagcagacgagatgggggacgactggttcgaggtttctgccctcgggagtgccgagcct
gatatcagcgagtcatcgacgcaagcctccgaacttgccaagatgggagaaactgaggaa
gctatggaatacgaccaggagctgattttcaagcacctatgtttttatcttgattctcca
tcaaatgccaggacgaatggtatggtcgttaaggccaagggtgcagaggatctcgatgta
catttcaacgagcttgcgcgcaagatcagagcaaatggcggcaaggtcaccgacagcctc
gatgagacgaagcttactcacgtcgttttggacaagcgggacacttctcgacgtgccgaa
cttaacaagcggacatcgaagccgaagcgcagacatctcgtcgtcaccgacttcatcgaa
gcttgtcttgaggaagacaccctgctggatgaagattcttttgctccttag
DBGET
integrated database retrieval system
