KEGG   Phanerochaete carnosa: PHACADRAFT_250733
Entry
PHACADRAFT_250733 CDS       T03128                                 
Name
(RefSeq) hypothetical protein
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
pco  Phanerochaete carnosa
Pathway
pco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHACADRAFT_250733
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pco03019]
    PHACADRAFT_250733
Messenger RNA biogenesis [BR:pco03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     PHACADRAFT_250733
SSDB
Motif
Pfam: ABC_tran AAA_21 AAA_29 AAA_25 AAA_15 AAA_28 RsgA_GTPase PduV-EutP AAA_23 VapE-like_dom SMC_N ATP-synt_ab NACHT Arf SRP54 MMR_HSR1 Zeta_toxin
Other DBs
NCBI-GeneID: 18915008
NCBI-ProteinID: XP_007392475
JGI: Phaca1_250733
UniProt: K5VAP1
LinkDB
Position
Unknown
AA seq 289 aa
MSSQKDTLHEIHVSNLTFSFAPSDPNVEPSLVDVCLELPKGSRTILIGANGAGKSTLLQI
LAGKRLISRQGTEVKIKDRDVFRQYPQGVTFLGTEWAMNPVVRGDIKVEDFLNSVGGYRH
KARRDLLLEILDVDLDWHMHAISDGERRRVQLVMGLMGEWDVLLLDEVTVDLDVLVRDDL
LRFLKQDSIERGATILYATHIFDGLNDFPTHVAHMRFGSFLTLPTPWPFPTVDAAGPNTL
LYNVALQWLKEDREFRKELERSGKKVRGPRKEEVPESSEAFYKKYDYSH
NT seq 872 nt   +upstreamnt  +downstreamnt
atatgtcttcacaaaaggacacgctgcatgagatccacgtcagcaacctgaccttctcat
ttgcgccatccgaccccaacgtcgagccgtcgcttgtagatgtctgtctggaactgccga
agggctcgcggacaattttaatcggggcaaatggggctggaaagtcgactctgcttcaga
tcttggctggaaagcgcctcatctcgcgacaaggcacggaagtgaagatcaaggaccgcg
acgtatttcggcagtacccccagggtgtgactttcttgggcactgagtgggctatgaacc
cggttgttcgaggcgatatcaaggtcgaagacttcctcaactctgttggaggctaccgcc
acaaggcaagacgagatctgcttctcgagattttggatgtcgacctggactggcacatgc
atgccatcagcgatggtgaacggcggcgagttcagcttgttatgggtctcatgggcgagt
gggacgtgctactgctagacgaggtcactgttgacctcgacgtactcgtgagagacgatc
tgctcaggtttctaaagcaggacagcatagagcgcggagcaacgatactctatgccacgc
atatcttcgatggcctgaatgattttcccactcatgttgcgcacatgcgctttgggtcgt
tccttacactacccactccttggccattcccaacggtcgatgctgccggaccaaacactc
tactatacaacgtcgctttgcagtggctaaaggaggatcgcgagttccgcaaggagctcg
agaggagtggtaagaaagtgagggggcctagaaaggaagaggtaccggagagctcggagg
ctttctataaaaagtatgactacagccactga

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