Pseudophryne corroboree (corroboree frog): 135055652
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Entry
135055652 CDS
T11513
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pcob Pseudophryne corroboree (corroboree frog)
Pathway
pcob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135055652 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcob03041
]
135055652 (EFTUD2)
Spliceosome [BR:
pcob03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135055652 (EFTUD2)
Complex C
U5 SnRNP specific factors
135055652 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
135055652
NCBI-ProteinID:
XP_063816047
LinkDB
All DBs
Position
3:complement(378616042..378721578)
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AA seq
977 aa
AA seq
DB search
MPDMDTDPYDEFGNYIGPELDSDDDDDDDDMGRDDRDVDVAEDDDDDEYMGDPDEDRAGM
EVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKAKKFSIMEQGLPATVYA
MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKHHDQDLCYTDILFTEQ
ERGVGMKSIPVTIVLPDTKEKSYLFNIMDTPGHVNFSDEVTAGFRISDGVVLFIDAAEGV
MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLLSMYSTD
ENLILSPLLGNVCFASSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRK
FTKKAPTSNSQRSFVEFILEPLYKILAQVVGDVDTSLPQTLEELGIHLTKEELKLNIRPL
LRLVCNRFFGEFTGFVDMCVQHIPSPKAGAKAKIEHTYTGGIDSELGEDMSLCDSDGPLM
CHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQVCTVGRLWVSVA
RYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPV
NPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKV
ADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQISWNRKKLG
EFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLSSVKDSIVQGFQWGTR
EGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVE
VQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA
FSLSVFHHWQIVPGDPLDKSIIIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDD
PMLLELAKQDVVLNYPM
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgccagacatggatactgacccctatgatgagtttggtaattacattggacctgagctg
gactctgatgatgatgacgacgatgatgacatgggaagagatgatagggatgtagatgtg
gcagaggatgatgacgatgatgaatacatgggagatcctgatgaggatcgtgcagggatg
gaggttgttctccatgaggataaaaagtactaccccactgctgaagaagtgtatggccca
gaggtggagactattgtacaggaggaggacacacagccactcacagagcctattattaaa
cctgtgaaggcaaaaaagttttcgataatggagcaaggactgccagctaccgtgtatgca
atggatttcttggctgatctcatggataattctgagcttattcggaatgtgaccttgtgt
gggcacctccatcatggaaagacatgctttgtagactgtctgatcgagcaaacgcatcca
gagatccgcaaacaccatgaccaggatctttgttatacggatattctcttcaccgaacag
gagagaggtgtcggcatgaagagtatacctgtaaccattgtccttccagacaccaaggaa
aaatcctatctgtttaatataatggatacaccaggtcacgtgaatttttctgatgaggtg
acagctggctttcggatatctgatggtgtagtgctgttcattgatgctgcagaaggggtg
atgctaaacactgagcgcctgattaaacacgctgtgcaggaacgtctagctgttacagtt
tgcattaacaagatagaccggctaattctggagctcaagcttcctcccactgatgcctat
tacaagctgaggcacattgtggatgaggttaatggattattaagcatgtattccacagat
gagaacctgattctatccccactcttgggcaatgtctgctttgcaagttcccagtacagc
atctgcttcaccctgggctcttttgcgaagatctacgcagacacttatggtgatatcaac
tatcaggagttcgccaaaagattgtggggtgatatttacttcaatccaaaaactcgtaaa
ttcaccaagaaagctccaacaagcaactcccaacgtagttttgtggaattcatcctggaa
ccactgtacaagatcttagctcaggtggtaggggatgtagacacatctctacctcagact
ctggaagagttaggaatccatctcacgaaggaggaactaaaactgaacatacgtcctttg
cttagactagtttgtaaccgcttcttcggggaattcacaggttttgtggacatgtgtgtc
caacacattccttccccaaaggctggtgctaaagccaagattgagcacacgtacactggt
ggtatagattctgagctaggggaagacatgagcctctgtgattctgatggccccctgatg
tgtcacacaaccaaaatgtacagcacggatgatggggttcagtttcatgcttttggccga
gtgctgagtgggactattcatgcaggacaaccagtcaaggtactgggagagaattacacc
ttagaggatgaagaggattcacaggtctgcactgttggaagactgtgggtgtccgtggcc
aggtatcacatcgaggtgaacagagtgcctgctggaaactgggttcttattgagggcgta
gaccagccgattgtaaagactgccacaatcactgagccacggggcaatgaggaggctcag
atcttcaggccgttgaagttcaacacaacatctgtaattaaaattgcagttgaacctgtt
aacccttcagagttgcctaagatgttagatgggttgaggaaagtcaacaagagttaccct
tctcttaccactaaggtggaggagtctggcgagcatgtcattcttggcacgggagagctg
tacctagactgtgtcatgcatgacctgcgcaagatgtattcagagattgacattaaggtg
gcagatccagtggtgacgttttgtgagaccgtcgtggaaacgtcatcactgaagtgtttt
gctgagactccaaataaaaagaataaaattacaatgattgctgagccattggagaaaggt
ctggcggaggacattgaaaatgaagtggtacagatatcatggaacaggaagaaacttgga
gaatttttccagaccaaatatgattgggatctgttagctgctcgttcgatctgggctttc
gggccagatacaactggtcccaacatcttagtagatgacacactgccttctgaggtggac
aaagctttgctgagttcggtgaaggacagtattgtacagggatttcagtggggaacaagg
gaggggcctctatgtgatgagttgatcagaaatgtgaagttcaagatcttggatgccgtc
attgcccaggaaccattacaccgtggaggtgggcagatcattccaacagcccgtagagtg
gtgtattctgccttcctgatggccactccccgactcatggaaccatattactttgtagaa
gtccaagctcctgctgactgtgtttctgctgtgtacactgtcctggccaggaggaggggc
catgtaactcaggatgctcctattcctggatcacccctctacaccatcaaagcgttcatc
ccagcaatagattcttttggctttgagacagatctgcgcactcacacccaggggcaggct
ttctccctgtctgtctttcatcactggcagattgtgccaggcgaccctttggacaaaagc
atcattatacgcccactggagcctcagccagcaccacatcttgcccgagagtttatgata
aagacaaggcgtaggaagggattgagtgaagacgtaagcatcagcaaatttttcgacgat
cctatgttgttggagttggccaaacaagatgtggtcctgaactatcccatgtaa
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