Phasianus colchicus (Ring-necked pheasant): 116228612
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Entry
116228612 CDS
T07365
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
116228612 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcoc03000
]
116228612 (KDM2B)
04121 Ubiquitin system [BR:
pcoc04121
]
116228612 (KDM2B)
03036 Chromosome and associated proteins [BR:
pcoc03036
]
116228612 (KDM2B)
Enzymes [BR:
pcoc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
116228612 (KDM2B)
Transcription factors [BR:
pcoc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
116228612 (KDM2B)
Ubiquitin system [BR:
pcoc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
116228612 (KDM2B)
Chromosome and associated proteins [BR:
pcoc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
116228612 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
116228612 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
Motif
Other DBs
NCBI-GeneID:
116228612
NCBI-ProteinID:
XP_031448441
Ensembl:
ENSPCLG00000004727
LinkDB
All DBs
Position
Unknown
AA seq
1289 aa
AA seq
DB search
MKLSEKMKAEKDSGRRLRPIGRRRYDEHEDLSDVEEIVSVRSFNLEEKLKSKTYRGDFVH
SMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSIDSYSSDSWLDMDEESCDAHIREEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSAKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTPKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKPQVDSILRRKSDEVHLRRKRKFEK
PQEPSMRKRRRSWKASDERSALLKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPS
TEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESEN
EEPKRALNNSERLHRFSKGLNGTPRELRHPLIPSLRSTPRGIARPPPSLSPPKCIQMERH
VIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRL
WTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSW
IAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSG
KEQFCGSCHIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSY
CNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVT
KEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccgaaaaaatgaaggcggagaaggattctggaagaagattgcggcccatt
ggtaggaggaggtacgatgagcacgaggacctctcggacgtggaggaaatcgtcagcgtc
aggagtttcaatctggaggagaaattaaagagcaaaacgtaccgcggggatttcgtgcac
tctatggatgggaaagattttacttttgagtatgtgcaaagagaagctctcagagttcca
cttatcttcagaaataaggacggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattggtgggaagtcgtcgaatagtggatgtgatggatgtgaacaca
caaagaggtgttgaaatgagcatgtcccagtttgtgagatactatgaaacaccagaggcc
cagcgtgaaaaactctacaatgtcatcagcttggagttcagccacacaaagctggagaac
attgtcaagcgtcccaatgtggtggacttagtcgactgggtggataatatgtggccacag
catttgaaggagagacagacagatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgatttccatattgatttt
ggaggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacgatgccaaagaattgaactgaaacaaggctataca
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaagagaaaacgcagcatagacagctattcatcggat
tcgtggttagacatggatgaagaatcttgtgatgctcatatccgggaggaaaaggatgac
agcttggataagaactccaaatccctggtggatggctcctcctcacccaacagcacacat
tcagaagggaaggagggtgcggggagaaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagtgcaaaatcaacgacccccacggattatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcatctcacagaa
tttgaactgaagggtttgaaagccctggtggaaaagcttgaatctctcccggagaacaag
aagtgtgttccagaaggcattgaagatccacaggctctcctggaggacatgaagaacatt
ctgaaagaacatgctgatgatgaccaaaatcttgcgatttcgggtgtccctgtggtcagc
tggcccaagaagaccccaaagaacagggcggtaggacggcccaaagggaagctgggcgct
gcctctgcggtgaagctcgcagctaaccggagcacggccggggcgcgccggaggaggacg
cgatgccgcaagtgcgaggcgtgcctgcggacagagtgtggcgagtgtcacttctgcaaa
gacatgaagaagtttggggggcctggcaggatgaaacagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtatgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcagatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctg
aaggaacagaaaatgaacagagacaataaggaagtaacagatgctgcaaaacggaaaggg
gactgtgaagaaactcccaggcggaaatctgaggaacattccaaaaagcctcaagttgac
tcaattctgaggagaaagtcagacgaagtacatctgcggaggaaaaggaaatttgagaaa
ccccaggaaccctctatgagaaaacggcggcgatcgtggaaggcttcggatgagcggagc
gccctgctcaaacccctgcggcgcctcaaacaggagccggaggacgagctgccggaagcg
cctccccgctccaaggacagcgaccagtcgcgatccagctcgcccaccgcgggtcccagc
acagagggggccgagcccagggacaagaagaagttcaagatgaggcggaaaaggcggctt
cccaataaggaactgagcaaggagctcagcaaggagctcaaccaagagatccaaaaaacc
gagaacagccttgccaatgagaatcaccaacccatcaaatctgaacccgagagcgaaaac
gaggaacccaagcgcgccttgaacaacagcgagagactccataggttcagcaaagggttg
aacgggactccccgggagctgaggcacccgctcatccccagcctgcggagcacaccgcgg
ggcatcgcccggcccccgccctcgctctctcctcccaaatgcattcagatggagcggcac
gtcatccggccgccccccatcagcccccctccggactcgctccccctggatgacggggca
gcccacgtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagac
ttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagatta
tggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcatt
attaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctg
agctggcttatcaacagactgccaggtcttcgagacctgctgttatcagggtgctcatgg
atagcagtgtcagcactttgtagttccagctgccctttactccgaactctggacgtgcag
tgggcagaaggactgaaagacgcccagatgagagacctcctgtcaccgcccacagataac
cggccaggctgcaacgggtgtactttagagagtatggaaacactttcttccagttcaggg
aaggagcagttctgtgggtcatgccacattcgcccggatatcagctcaggtcagatcgac
aaccggagtaaactacggaacatcgttgagctgcgcttggccggcctggatatcaccgat
gcgtctttgcggctgatcataaggcacatgcctctgctctccaaactcaatcttagttac
tgtaaccacgtgacagatcagtctattaacctgctgaccgcggttggaacaaccacgcgg
gattcattaacggaaattaatttatcagactgcaataaggtgactgaccagtgcctgtcc
tactttaaacgttgtggaaacatctgccagatcgacttgaggtactgcaagcaagtgaca
aaagaaggctgtgagcagttcatagcagagatgtcagtaagtgttcagtttgggcaagtg
gaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
