Pseudomonas coronafaciens pv. oryzae: POR16_15605
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Entry
POR16_15605 CDS
T08147
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03030
DNA replication
pcof03410
Base excision repair
pcof03420
Nucleotide excision repair
pcof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
POR16_15605 (ligA)
03410 Base excision repair
POR16_15605 (ligA)
03420 Nucleotide excision repair
POR16_15605 (ligA)
03430 Mismatch repair
POR16_15605 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcof03032
]
POR16_15605 (ligA)
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_15605 (ligA)
Enzymes [BR:
pcof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
POR16_15605 (ligA)
DNA replication proteins [BR:
pcof03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
POR16_15605 (ligA)
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
POR16_15605 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
POR16_15605 (ligA)
MMR (mismatch excision repair)
DNA ligase
POR16_15605 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
POR16_15605 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
QGL57665
LinkDB
All DBs
Position
complement(3473276..3475639)
Genome browser
AA seq
787 aa
AA seq
DB search
MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQ
RVGSAALSAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQYSC
EPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPGVLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSA
EIADTHIGVLNALKKWGMPVSRELKLADGVEECLAYYRDIGERRLTLSYEIDGVVFKVNN
LAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV
ANATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVQVVAERRPDTARPVEVPQTCPVCGS
HVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIGGLGDKTIEQ
LVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAITDSRQPTLARFIYALGIPDVG
EETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECG
LQLQDQGELGAEFAASTTLEGLIDKLHIPLVGPGAALKLAEKFGTLEAIIGADWLDMRQA
LPEKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLE
RMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLT
ELGVAVD
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccgtcgaaacccgaatcctcgaactgcgtgcagagctggatcagcataactat
cgctatcacgtgctggacgaacccagcatcccggatgtcgaatacgaccgcctgtttcat
gaactcaaggccctcgaggccgaaaacccgcatctggtcacgccggactcgcccactcag
cgggttggcagcgcagccttgtcggcttttacccaggtacgtcacgaaatgcccatgctc
agcctgggcaacgcgtttgaagaaaacgacctgcgtgagttcgaccgccgagtgaccgag
ggcctggatttgcctgccggtgatctgtttggcgaaggcggcaaggtgcagtacagctgc
gaacccaagctcgacggcctggcagtcagcctgctgtaccgcgacggagcgctggtgcgc
ggtgcaacgcgtggcgatggcacaacgggcgaagacatcagcgtcaatgtgcgcacggtg
cgcaatattccgctcaagctgcaaggcaagggctggccgggtgtgctggaagtgcgcggc
gaagtgttcatgtccaaggccggtttcgagcggctcaatgccagccagctggaagtgggt
ggcaagactttcgccaacccgcgcaatgccgctgccggcagcctccgtcagctggactcg
aagatcaccgccaatcgtccgctggaattctgctgctatggcctgggccagacctcggcg
gaaatcgccgacacccatatcggcgtattgaatgcgctgaagaagtggggcatgccggtc
agccgcgagttgaaactggcggatggcgtcgaggaatgcctggcctattaccgcgacatc
ggcgagcgacgtctgacgctgagctacgagatcgatggcgtggtgttcaaggtcaataac
ctggctgcgcagcgcgaactgggttttcgggctcgtgagccacgttgggccattgcccac
aaattcccggccatggaagagctgaccgaactgctggacgtcgagtttcaggtggggcgc
accggtgctgtcacgcccgttgcacgtctcaagccggtcaaggttgccggggtcatggtc
gccaacgcaacgctgcacaacatggacgaagtggcgcggctgggtgtgatgattggcgat
accgtgatcattcgccgagccggtgacgtcatcccgcaagtggtgcaggtggttgccgag
cgtcgtccagacaccgctagaccggtcgaggtgccgcagacctgccctgtgtgtggctcg
catgtcgagcgcacgcagttgatcaagcgcagcaagggcaaggaaaccgtctctgaaggg
gcggtatatcgctgtgttggtcgtctggcctgtggcgcgcaactcaaacaggcaatcatt
cattacgtgtcgcggcgtgccatggatatcggggggctgggcgacaagaccatcgagcaa
ctggtcgatgaaaaactcattggttcgcctgccgacctgtacaaactgaaatacgagcag
atcatcgacctggaaggctttgctgaaatctccagcaacaagctgctcaaggcgattacc
gacagcaggcagccgaccctggcgcgcttcatctatgccctgggcatcccggatgtaggc
gaagagacggccaaggtcttggcgcgttcgctggcgtcgctggatcgtgtcaagcaggcg
ctgccggaagttctgacctacctgccggatgtcggcctggaagtcgcttacgagattcac
agctttttcgaggacgagcacaatcgcaacgtcattgatgcactgttgggtgaatgcggt
ctgcagcttcaggatcagggtgagctgggggccgaatttgcggccagtactactctggaa
gggctgatagacaagctgcacattccattggtagggccgggcgctgcgctcaagctggcc
gagaagtttggcacgctggaagcaatcatcggcgccgactggctggatatgcgtcaggcg
ctgcccgagaagcaggccaagtcggtccgcgacttctttgatgacagcgcaaacgccgag
cgcgcccgcgccatcgaagcccagctcaaggactttggcatgcactggcgcagcgagaag
aaaaccgtcgagggcttaccgttggccggccagacctgggtgctgaccggctccctggag
cgcatgagtcgcgacgtcgccaaggaaaaactcgaaagcctgggtgccaaggtgtccggc
tcggtatcggcgaagacccacaccgtggtcgcgggccccggcgctggttcgaaactgacc
aaagccaacgaactgggcctgaccgtgctggacgaagacgcactgctcaagcgcctgacc
gaactgggcgtggcggttgactga
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integrated database retrieval system
