Pseudomonas coronafaciens pv. oryzae: POR16_23600 Help Entry POR16_23600       CDS       T08147                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pcof  Pseudomonas coronafaciens pv. oryzae Pathway pcof03030   DNA replication pcof03410   Base excision repair pcof03420   Nucleotide excision repair pcof03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pcof00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     POR16_23600 (ligB)    03410 Base excision repair     POR16_23600 (ligB)    03420 Nucleotide excision repair     POR16_23600 (ligB)    03430 Mismatch repair     POR16_23600 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pcof03032]     POR16_23600 (ligB)    03400 DNA repair and recombination proteins [BR:pcof03400]     POR16_23600 (ligB) Enzymes [BR:pcof01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      POR16_23600 (ligB) DNA replication proteins [BR:pcof03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      POR16_23600 (ligB) DNA repair and recombination proteins [BR:pcof03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      POR16_23600 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      POR16_23600 (ligB)    MMR (mismatch excision repair)     DNA ligase      POR16_23600 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       POR16_23600 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_DNA_ligase DNA_ligase_aden RNA_ligase HHH_5 Motif Other DBs NCBI-ProteinID:  QGL59104 LinkDB All DBs Position 5170483..5172165 Genome browser AA seq 560 aa AA seqDB search MLPTIRLMTFALVFFLPGLGYASQCPDWSAARANNEITALQKQIAEWDDSYHRQGVSQIP DELYDQSRLKLKVWRSCFRVSTVADNPLKTATGPLAHPIPHTGVNKLADEKSVTAWLRGR TDVWIQPKVDGVAVTLVYEGGRLVQAISRGDGKKGKDWTPQARLIKAIPQQLPHAEYLVL QGELYWRLDDHIQAISGSINARSKVAGLLARRTISPQQADAIGLLVWDWPNGPADMPQRL AGLQAQGFEDSATYTHRLENHAQASQWREHWYRNPLPFATDGVIIRQGQRPPAQRWQASA PYWIAAWKHPYAQALAEVRKVNFNIGRSGRITPVLELKPVRLDDRTVSRISTGSLQRWQT LDIRPGDQIAVSLAGLTIPRLDGVVARAAERVSMTIPHASDFHELSCWQATPGCESQFRA RLIWLSGKKGLALPGVGPGTWDKLIESGQISGLLDWMTLNHAELANIPGLAERSSAKLLD SLQTARAKPFLAWLKAIGMPPTGDAKLPDNWHDLTTRSVEQWQAEPGVGASRSAKLRAFF QDPHVKAMSQQLQAHGISGF NT seq 1683 nt NT seq  +upstreamnt  +downstreamnt atgttgcccaccatccgcctgatgacgttcgctttggtcttttttcttcccggcctcggc tacgccagccagtgccctgactggtctgccgccagggcaaacaacgaaataaccgcactg caaaagcaaatcgccgaatgggacgacagttaccaccggcaaggcgtatcgcagatccct gacgaactttacgatcagtcccggctgaagctgaaggtctggcggtcgtgcttcagggtc tcgacggtcgcagacaacccacttaaaaccgctaccggtccgcttgcccaccccatcccg cacaccggcgtgaacaagctcgcggacgagaaaagcgtcacagcctggctcaggggccgc accgacgtctggattcaacccaaggtcgatggggtagcggtcacgctggtctacgaggga ggcagactggtgcaggcgatcagtcgcggtgacgggaaaaaaggtaaggactggaccccg caagcccggttgatcaaggcaatccctcagcagttgccccacgctgaatatctcgtcctg caaggcgagctttactggcgactggacgatcacattcaggccatatccggcagcatcaat gcccgcagcaaggtcgcggggctgctggcccggcggacaatcagcccgcaacaggccgac gccatcgggctgctcgtctgggattggccgaacgggcctgccgacatgcctcagaggctc gcaggcctgcaagcacaaggcttcgaagacagcgcgacttacacgcataggctggaaaac cacgctcaggcctcacagtggcgtgagcactggtatcgcaacccgctgccgtttgccacc gacggcgtgatcattcgccagggtcagcgcccaccggcacagcgctggcaggccagtgcg ccttactggattgcagcatggaagcacccctatgcccaagccctggccgaagtgcgcaag gtcaatttcaatatcggtcgcagtggcaggatcacgccggtgctggagctgaaaccggtg cgcctcgacgaccgcactgtcagtcgtatcagcacgggttcactgcagcgctggcagact ctggatataaggcctggcgatcagattgccgtgagtctggccgggctgacgattcctcga ctagacggcgtagttgcgcgcgctgccgaacgagtgagcatgaccatcccgcatgccagt gattttcatgaactgagctgctggcaagcaacaccgggctgtgaaagtcagttccgcgcc aggctgatatggctcagcggcaagaaggggctcgcgctgccgggcgtcggtccgggaacc tgggacaagctcattgaaagtggccagatcagcggcttgctcgattggatgacgcttaat catgctgagcttgctaacattcccggccttgccgagcgcagcagcgctaaactgctcgac agcctgcaaacagcccgtgcaaagccgtttctggcatggctcaaggccatcggaatgccg cccacaggtgacgcgaagctgcctgataactggcacgacctgacaacacgcagcgtcgag caatggcaggctgaaccgggtgtcggcgcgagccggtcggcaaaactcagggcctttttt caggacccgcacgtaaaagccatgagccagcaattgcaggcgcacggtatttcaggtttt taa

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