Segatella copri: LK433_09975
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Entry
LK433_09975 CDS
T07933
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcoi
Segatella copri
Pathway
pcoi03030
DNA replication
pcoi03410
Base excision repair
pcoi03420
Nucleotide excision repair
pcoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK433_09975 (ligA)
03410 Base excision repair
LK433_09975 (ligA)
03420 Nucleotide excision repair
LK433_09975 (ligA)
03430 Mismatch repair
LK433_09975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcoi03032
]
LK433_09975 (ligA)
03400 DNA repair and recombination proteins [BR:
pcoi03400
]
LK433_09975 (ligA)
Enzymes [BR:
pcoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LK433_09975 (ligA)
DNA replication proteins [BR:
pcoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LK433_09975 (ligA)
DNA repair and recombination proteins [BR:
pcoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LK433_09975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LK433_09975 (ligA)
MMR (mismatch excision repair)
DNA ligase
LK433_09975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LK433_09975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
BRCT_2
DNA_ligase_ZBD
Lar_restr_allev
DUF3811
RUBY_RBDX
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
UEA42305
LinkDB
All DBs
Position
2353889..2355859
Genome browser
AA seq
656 aa
AA seq
DB search
MEEKLLQMKSLVERLNQASDSYYNGKGELMTDYEWDALFDQLKRLEEETGEILPNSPTNR
VSEDSIVGKKEEHEFAALSLAKTKQVSDLVKWAEDRPIWISWKLDGLTLVVTYDGGKLTK
IVTRGNGHIGTNITHLAPAISGIPATISEKGHLVVRGEAVISYADFEQFIIESEGDYANP
RNLASGSLTLKDIEEVKQRHIQWIPFTLVYTERELSSWGERMQMLKDLGMNPVERERIDH
PTTENIQLEIDKFTEKVTSKKNPFPVDGLVICYDDTAYAATGSVTGHHATRAGFAFKWQD
EHADTVLDHIEWSCAASTITPVAVFKPVELEGTTVQRASLCNVSECERLGIGDKGTRLQV
IKANKIIPKVINITEVVGSFVIPAECPVCHAPAVVRESESGTKTLHCTNAACPAKQLKKF
ARFVSKEGINIDGISEQTVWKFINHGFISEYADFYKLKNYAFEISCFEGFGKKSVSNLLE
SVEKSRHTDGRHLLYALNIPLCGGDVAKKLLSRYKVKELIETARLSMFDDEFASIDGIGP
EKSAKFIAWFKDDVHFLHVQHLLSELIIEEQEPVETGNKCQGLTFVVTGDVHHYKNRNEL
KAYIESQGGKVTGSVSKSTNFLINNDAASQSSKNKKAHELNIPIITEDEFIEKFQE
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaactattgcagatgaagagcttggttgaaagactcaaccaagcttcggat
agttattataacggaaaaggcgaactcatgaccgactatgagtgggacgcccttttcgac
cagctcaagagattggaagaggaaacaggcgaaattctgcctaactcccctactaatcgc
gtgtcagaagattctatcgtaggaaagaaagaggagcatgaatttgccgccctctctctg
gcaaagaccaaacaggtaagtgatcttgtaaaatgggcagaagaccgccctatctggatt
tcatggaaactggacggactgaccctcgtagtaacctatgacggcggaaaactcaccaaa
atcgttacccgcggtaatggacatatcggcaccaacattacccacttggctccagccatt
tcaggcattcctgctaccatttcagagaaaggacatcttgtagtaagaggagaagccgtc
atttcgtatgctgattttgaacagttcatcatcgaaagcgaaggcgattacgccaatcca
cgaaacctcgcttcaggctcactcacgctgaaggatattgaagaggtgaagcagcgccac
atccaatggattccgttcaccctggtttatactgagcgggaactttcctcatggggcgaa
cgcatgcagatgctgaaagacctgggaatgaatcctgtagaacgtgagcgtattgaccac
cctaccacagaaaatatccagctggaaatagacaagtttacggagaaggtgacaagcaag
aaaaatcctttcccggtagacggactggtgatttgctacgatgatacggcttatgcagct
acggggtcggttacaggccaccacgctacgagggcaggatttgcctttaaatggcaagat
gaacatgctgacaccgtactcgaccacatcgaatggtcgtgcgcagccagcaccatcacg
cctgtagctgttttcaaaccggtagaactagaaggaaccaccgtgcagcgtgcctcgctc
tgcaatgtaagcgaatgcgagcgtctgggcattggcgacaagggaaccaggctgcaggtc
atcaaggccaataagattatcccgaaggtaatcaatattacagaggttgtgggtagtttt
gtcattcccgccgaatgcccggtttgccatgcgccagccgtagtgcgcgagagtgagagc
ggcaccaagactctccattgcaccaatgcagcctgcccagccaaacaacttaagaaattt
gcccgcttcgtcagcaaggaaggaatcaatattgacggaatctcagaacagactgtctgg
aaattcatcaatcatggttttatcagcgaatatgctgatttctacaaactgaagaattat
gcgttcgagatttcctgtttcgaaggatttggcaagaagagcgtaagcaatcttctggag
agtgttgagaagagccgccatactgatggccgtcatctgctctacgccttgaatattccg
ctctgcggcggcgatgtggctaaaaaactgctcagccgttacaaggtgaaggaactgata
gaaacggctcgcctgagcatgttcgatgatgagtttgcaagcattgatggtattggacct
gaaaagagtgccaagtttatcgcctggttcaaggatgatgttcatttcctgcatgtgcag
catctgctgtccgaactgattatcgaggagcaggagcctgtagaaacgggcaacaaatgc
cagggactgactttcgtcgtaacgggagatgtgcatcattacaagaaccgcaacgagctg
aaggcttatattgaaagccagggcggcaaggttacgggaagtgtgagcaagagcactaac
ttcctgattaacaacgatgcagcttcgcagagttcgaaaaataagaaagcccatgaactc
aatattccaatcattactgaggatgagttcattgaaaagtttcaggagtaa
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