Proteus columbae: F1325_12760
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Entry
F1325_12760 CDS
T06419
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcol
Proteus columbae
Pathway
pcol03030
DNA replication
pcol03410
Base excision repair
pcol03420
Nucleotide excision repair
pcol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F1325_12760 (ligA)
03410 Base excision repair
F1325_12760 (ligA)
03420 Nucleotide excision repair
F1325_12760 (ligA)
03430 Mismatch repair
F1325_12760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcol03032
]
F1325_12760 (ligA)
03400 DNA repair and recombination proteins [BR:
pcol03400
]
F1325_12760 (ligA)
Enzymes [BR:
pcol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F1325_12760 (ligA)
DNA replication proteins [BR:
pcol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F1325_12760 (ligA)
DNA repair and recombination proteins [BR:
pcol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F1325_12760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F1325_12760 (ligA)
MMR (mismatch excision repair)
DNA ligase
F1325_12760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F1325_12760 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QHN11272
UniProt:
A0A6I7DBA6
LinkDB
All DBs
Position
complement(2656924..2658951)
Genome browser
AA seq
675 aa
AA seq
DB search
MNKNTQQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEHPELITSDSPT
QRVGALPLTAFEQVRHEIPMLSLDNAFDETSYLAFDKRLRDRLKNSEEITFCCELKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLRLYGEDIPARIEIRGEVFMNEK
GFEYLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPTSH
YERLQQFKKWGLPVSDAVKLCTGSKAVLDFYHHVEEVRPNLGFDIDGVVIKVDDIALQEE
LGFVSRAPRWAIAYKFQAQEQMTIIKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH
NADEIERLGIRIGDTVVIRRAGDVIPQVVSVIEEKRPDDAQEIVFPTHCPICDSDVERIE
GEAVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLDE
KILSGLERMGEKSAKKLITALDKAKSTTFARFIYALGIREVGEATASGLTTHFSTLDELR
NADVEALKLVPDVGDVVAKHVVNFFQEEHNKTVIDQLINDAGITWQAPVIVTHEAGDNPF
AGKTVVLTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLVKANELGIT
VIDEDEMIRLLDQSK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacactcaacaaaaaattgataaacttcgcgttactctacgtcaccatgaa
tatctctatcatgtcatggacgcacctgaaatacctgatgctgaatacgatcgcttaatg
aatgagctaaaagcattagaagctgaacaccctgaattaattacctctgattcgcctaca
cagcgagttggtgctttacctctaacggcatttgagcaagtgagacatgaaattccgatg
ctctccttagataatgcttttgatgaaacaagctatctggcttttgataagcgtttacgt
gatcgtttaaaaaatagtgaagagatcactttctgttgtgaattaaaattagatggattg
gcagtgagtttactttatgaaaatggagtattagtacaagctgcaacgcgtggtgatggc
acaacaggggaaaatatcactgagaatgtgagaacaatcaaagccattccactgcgttta
tatggtgaagatattcctgctcgtattgaaattcgtggcgaagtctttatgaatgaaaaa
ggctttgaatatttaaacgaagaagcgcgccgcacaggcggaaaagtttttgctaatcct
cgcaatgccgcagctggctcattaagacagcttgatcctcgtattacagcaaaacgtcca
ttaacctttttctgttatggtgtcggtgtacttgaaggtggcgaattacctacaagccac
tatgagcgcctacaacaatttaaaaagtggggattgcccgttagcgatgctgtaaaactt
tgcaccggcagcaaagcagtacttgatttttatcaccatgtagaagaagttcgccccaat
ttaggttttgatattgatggtgttgttatcaaagttgatgatattgcattgcaagaggaa
ctgggtttcgtatcaagagcaccacgttgggctattgcttataaattccaagctcaagag
caaatgacgattatcaaagatgtcgaattccaagtaggacgcactggagcgattacacct
gttgcacgtttagaacctgttcaagttgcaggtgttgttgtgagtaatgcaacgttacac
aatgctgatgaaattgaacgcttaggaatacgcattggcgatacggtcgttattcgtcga
gctggtgatgttattcctcaggttgtcagtgtgattgaagaaaagcgccctgatgatgct
caagagattgtctttccgacacattgtcctatttgtgattctgatgttgagcgcattgaa
ggcgaagcggttgctcgttgtactggcggcttaatttgtggagcgcaacgtaaagaagca
cttaaacattttgtttcacgtcgagctatggatgtggatggaatgggcgataaaattatc
gaccaactggttgagaaagaatatgtcaagacaccagcagatctcttccgtttagatgaa
aaaattctatctggtttagagagaatgggtgaaaaatcagctaaaaaattgatcactgct
ttagataaggctaaatcaacgacatttgcacgttttatttatgcacttggtattcgagaa
gttggtgaagcaacagcaagtggattgacaacacatttctcaacccttgatgaattacga
aatgcagatgtagaagcgctaaaattagtccctgatgtgggtgatgtcgtcgctaaacat
gtcgttaatttcttccaagaggaacacaataaaacggttatagatcaattgatcaatgat
gccggtattacatggcaagcgcctgttattgtgactcatgaagcgggtgataatcctttt
gctggtaaaaccgttgtgttaactgggtcactttcacagttaacgcgtgatgaagcaaaa
gacagattagtggcgttaggcgcaaaagtaagcggaagtgtttctaaaaaaactgacatg
gtcattgcgggtgaagcagcaggctctaagttagtgaaagctaacgaattagggataact
gttatcgatgaagatgaaatgatacgattacttgatcaatcgaaataa
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integrated database retrieval system
