Phocaeicola coprophilus: I6J50_06315
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Entry
I6J50_06315 CDS
T07209
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcop
Phocaeicola coprophilus
Pathway
pcop03030
DNA replication
pcop03410
Base excision repair
pcop03420
Nucleotide excision repair
pcop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6J50_06315 (ligA)
03410 Base excision repair
I6J50_06315 (ligA)
03420 Nucleotide excision repair
I6J50_06315 (ligA)
03430 Mismatch repair
I6J50_06315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcop03032
]
I6J50_06315 (ligA)
03400 DNA repair and recombination proteins [BR:
pcop03400
]
I6J50_06315 (ligA)
Enzymes [BR:
pcop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6J50_06315 (ligA)
DNA replication proteins [BR:
pcop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6J50_06315 (ligA)
DNA repair and recombination proteins [BR:
pcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6J50_06315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6J50_06315 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6J50_06315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6J50_06315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
HNOB
PhoU_div
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QRO25848
LinkDB
All DBs
Position
complement(1435238..1437235)
Genome browser
AA seq
665 aa
AA seq
DB search
MTETERIDQLREELHRHNHNYYILNAPVISDQEFDKLMRELQDLEARHPEHFDPTSPSMR
VGSDINKDFVQVEHKYPMLSLGNTYSEDEVTEFYERVRKSLNEDFEICCEMKFDGTSISL
TYEDGRLIRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGTGYPKSFEIRGEILMPWTVFEE
LNRERELREEPLFANPRNAASGTLKSQNSAVVAARRLDAYLYYLLGDNLPCDGHYENLQE
AEKWGFKISKITRKVHSLQEIFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGYTAK
SPRWAIAYKFQAEQALTRLLKVTYQVGRTGAVTPVANLEPVQLSGTVVRRASLHNADIIA
SLDLHLGDNVYVEKGGEIIPKITGVDLASRPAGSEKVTFITHCPECGSKLVRYEDEAAHY
CPNETGCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQEGLIHDVADLYTLRKEDICRL
ERMGDKSAENIIQGIRKSTEVPYERVLFALGIRFVGETVAKKVAKAFTSIDALAQATLDD
LIHVDEIGEKIAQSIRLYFSDEKNRSLIERLQQAGLQLAAGEKDLSDHTDKLQGQSIVIS
GVFARHSRDEYKELIEKHGGKNVGSISRKTSFILAGENMGPSKLEKAEKLGIRIVNEEEF
LKMID
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaacagaaagaatagaccagctgcgagaagaattacatcgccataaccacaac
tactatatactgaatgcgcccgtcatctccgatcaggagttcgacaagctgatgcgggaa
ctgcaggatctggaagcccggcatccggaacatttcgatcccacttcgccgagcatgcgc
gtgggcagcgacatcaacaaggactttgtccaggtggagcacaaatatccgatgctttcg
ctgggcaatacctattccgaagacgaagtgaccgaattctacgaacgtgtccgcaagtcg
ctgaatgaagacttcgagatctgctgtgaaatgaaattcgacgggacctccatttcgctg
acctacgaagacggccggctgatccgtgccgtaacccggggcgacggagtgcgcggtgac
gacgtaacagacaatgtaaagaccatccgcagcattccgctggtgcttcatggaaccggt
tatccgaaaagtttcgagatccgcggagagatcctgatgccctggaccgtctttgaagaa
ctgaaccgggaacgggagctgcgcgaggaacctctctttgccaacccgagaaatgccgct
tctggaaccctgaagtcacagaactcggctgttgtagccgcacgcagactggatgcgtat
ctctattacctgctgggagacaacctgccttgcgacggacactacgaaaatctgcaggag
gccgaaaaatggggattcaagatttcaaaaatcacccgtaaggtacattccctgcaagaa
attttcgatttcatcaagtactgggatgtggaacgcaagaacctgcctgtagccaccgac
gggattgtcctgaaagtaaactccctccgccagcagcgtaatctgggctacacggccaag
tctccacgctgggccatcgcctataagtttcaggctgaacaggcactgacccgtctgctg
aaggtcacctatcaggtgggacgcaccggagctgtcacccccgtagccaatctggaaccg
gtacaactgtcaggaaccgtcgtacgccgggcttcactccataacgcggatatcattgcc
tcgctcgacctgcatctgggcgacaacgtctatgtagaaaaaggcggggagatcattccg
aaaatcaccggggtggatctggcttcacgtccggccggaagtgagaaagtgaccttcatc
actcattgtccagaatgcggaagcaagctggtacgctatgaagacgaagcagcccactac
tgtcccaatgaaacaggatgtcctccgcagatcaaaggaaagatcgaacactttatcagc
cggcgtgccatgaacatcgaaggactgggccctgaaaccgtcgaccagttctatcaggaa
ggcctgattcacgatgtagccgatctttacaccttgcgcaaggaagacatctgccgcctg
gaacggatgggagacaaatcggctgaaaatatcattcagggaatccggaagtcaacggaa
gtaccctacgaaagagtactcttcgccctgggcatccgttttgtgggagaaaccgtcgcc
aagaaagttgccaaagcctttacttccattgatgccctcgcacaggccacacttgatgat
ctgatccatgtggacgaaatcggagagaagatagcccaaagcatccggctgtatttctcc
gacgagaaaaaccgttccctgatcgaacgcctgcaacaggccggcctgcaactggctgcc
ggagaaaaggatctgtccgaccacactgacaaactgcagggccagtccatcgtcatcagc
ggcgtctttgcccgccattcccgcgacgaatacaaagaactgatcgagaaacacggaggc
aaaaatgtgggcagcatctccaggaaaaccagcttcattctggccggagaaaacatgggt
cccagcaaactggaaaaagcagagaaactgggcatccgcatcgtgaacgaagaagaattt
ttgaaaatgattgactaa
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