Propithecus coquereli (Coquerel's sifaka): 105816594
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Entry
105816594 CDS
T08746
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pcoq
Propithecus coquereli (Coquerel's sifaka)
Brite
KEGG Orthology (KO) [BR:
pcoq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcoq03036
]
105816594 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pcoq03400
]
105816594 (SMCHD1)
Chromosome and associated proteins [BR:
pcoq03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
105816594 (SMCHD1)
DNA repair and recombination proteins [BR:
pcoq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
105816594 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
105816594
NCBI-ProteinID:
XP_012507531
Ensembl:
ENSPCOG00000028124
LinkDB
All DBs
Position
Unknown
AA seq
1716 aa
AA seq
DB search
MAAAGGGGPGGPSEGTGDDGGGVGSRTVYLFDRREKESELGDRTLQVGERSDYAGFRAAV
CQVHERAKEGCAHETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDTLVKSGMYEYYAS
EGQNPLPFALAELIDNSLSATSRNVGIRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQLN
NWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAVFFVGQSARMISK
PADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKISMFEKGKAPKIINLREIQDDMQT
LYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFIL
EKAARGKRPIFECFWNGRLIPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQV
STNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKG
VITRPDLPSKKQGPWATYSAIEWDGKIYKAGQLVASSGNKEIISHISQHGGKWPYWFKKM
ENIQKLGNYTLKLQVVLNESNADTYSGRPLPSKIIKFSVKEGKPEKFSFGLLDPPFRVGV
PFNIPLEFQDEFGHASQLVTDIQPVLEASGLSLRYEEITKGPNCVIRGVTARGPVNSCQG
KNYNLKVILPGLKEDSQILKIRLLPGHPHRLKVKPDSEILVIENGTAFPFQVEVLDESDN
ITAQPKLIVHCKFSGAPDLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEILNFK
EVPPVEKTIKLLPSSHVARLQIFSLEGQKAIQIKHQDEVNWIAGDIMRNLIFQMYDEGER
EINITSALAEKIKVNWTPEINKEHLVQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAF
TVRPLPDEPKHLKCELKGGKTVQMGQELQGEIARNTSENTQSISVRGIRFIPGPPGNKDL
CFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRDLQNPLLVQLCDQWDNPAP
VPHVKISLIKASNLKLTPSNQQHKTDDKGRANLGVFSIFAPRGEHTMQVKAIYNKSTIEG
PTIKLMILPDPEKPVRINVKYDKDASFLAGGLFTDFMITVISEDDSIIKNINPARISMKL
WKLSSGGNRPPANAETFSCNKIKDNDKEDGCFYFRDKVIPNKVGTYCIQFGFMMDKANIL
NSEQIIVDVLPNQPVKLVPKIQPPTPAVSNVRSVASRTLVRDLHLSIMDDYSNHTGIDLV
GTIIATIKGFNEEDTDIPLFNGKVRTLEFPFVNGSAEITSLVLAENSPGRDSTEYFIIFE
PRLPLLSRTLEPYILPFMFYNDVKKQQQMAALTKEKDQLSKSIFAYRGLFEANQQLLDEM
KCKLFCIQRPCKIMLQGIVRQKMPHIEALLKRKLSEQDELKKKPRRSCTLPNYTKGTGDI
LGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKK
TLPDWKRPLPHFRNGKLYFKPIGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDA
ANHYRKEVVKIAHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLII
GKQIDLLQQYRSALCKLDAVNKDLNNQLEYLRTPDMKQKKQELDEQEKNLKLIEQKLGMT
PTRKSNDSLRHSAKVEVADCPVPPKRMRRETIRQNR
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggcccggcgggccctctgaggggacaggggacgatggc
ggaggtgtcggctccaggacagtgtacttatttgaccggcgcgagaaggagtccgagctc
ggtgaccggacgctgcaggttggggagcgctcggactacgcgggattccgcgccgcagtg
tgtcaggtacacgaacgggcgaaggagggatgcgcgcatgaaactgttaaagatggagtc
accctgtacctgctacagtcagtaaatcagttacttctaacagccacaaaagagcgaatt
gacttcttacctcactatgacacactggttaaaagtggcatgtatgaatattatgcaagt
gaaggacagaatccattgccatttgcacttgcggaattaattgataattcattgtctgcc
acttctcgtaacgttggtattagaagaatacagatcaaattgctttttgatgaaacacaa
ggaaaacctgctgttgcagtgatagataatggaagaggaatgacctctaagcagcttaac
aactgggccgtgtataggttgtcaaaatttacaaggcaaggtgactttgaaagtgatcat
tccggatatgttcgtccagtaccagtgccacgcagtttaaatagtgatatttcctatttt
ggtgttgggggcaagcaggctgttttctttgttggacaatcagccagaatgataagcaaa
cctgcagattcccaagatgttcatgagcttgtactttctaaagaagattttgagaagaag
gagaaaaataaagaagcaatatatagtggatatattagaaacagaaagatttctatgttt
gaaaaagggaaggcacctaaaattatcaacctaagggaaatacaagatgacatgcaaaca
ttgtatataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagacggt
gtagtggaagggattatccgataccatcctttcttatatgacagagaaacataccctgat
gatccatgctttccatcaaaattaaaagatgaagatgatgatgacgattgtttcatactt
gagaaggcagcaagagggaaaaggcctatttttgaatgtttttggaatggacgattaata
ccgtatacatcagttgaagactttgactggtgtactcctcctaagaagagagggcttgca
ccaattgaatgctacaatagaatatctggtgcattattcactaatgacaaattccaggtc
agcacaaataaactaacttttatggatcttgagctaaaattgaaagataagaacaccctt
tttacgaggattttaaatggacaggagcaacgaatgaaaattgacagagaatttgcttta
tggctgaaggactgtcatgaaaagtatgataaacaaataaaatttacattgtttaaagga
gtaattacacgtcctgatcttccttctaaaaagcaaggcccctgggcaacatactcggca
atagaatgggatggaaagatatacaaagcaggacagctggtagcttcaagtggaaataaa
gaaatcatttcacatattagtcaacatggaggaaaatggccttactggtttaaaaaaatg
gaaaacattcaaaagttggggaattacacattgaaattacaagttgtattgaatgaaagt
aatgcagacacttattcaggaagaccactaccatctaaaataattaaattttctgttaaa
gagggtaagccagagaaattttcatttggtctcctggatcctccttttcgtgttggagtt
ccattcaatatccctctggagtttcaggatgaatttggtcatgctagtcaactagtaact
gatattcagccagttcttgaagcaagtggtttatctttacgttatgaagaaataaccaaa
ggaccaaattgtgtaatccgaggtgttacagccaggggcccggtaaactcttgtcaaggc
aagaattataacctgaaggttattctaccgggtttaaaagaagactctcagattttgaaa
attagattactacctggtcaccctcatcgattgaaagtgaaacctgattctgaaatttta
gttatagaaaatggaacagctttcccatttcaggtggaagtattagatgaatcagacaac
ataacagcacaaccaaaattgattgttcattgtaagttttcaggtgctccagaccttcca
gtctatgttgtggattgcagtagttctggaaccagtattttaacaggatctgcaattcaa
gttcagaatattaaaaaagaccagacacttaaagcaagaattgaaatacttaattttaaa
gaagtgccacctgtggagaagactattaagttgcttcccagtagccatgttgcaagactg
cagatatttagcttggaaggacagaaggcaatccagatcaaacatcaggatgaggttaat
tggatagcaggcgacattatgcgtaatctcatttttcaaatgtatgatgagggagaaaga
gaaatcaatataacatcagctttagcagaaaaaattaaagttaactggactcccgagatt
aacaaagaacacttggtacagggtctacttcctgatgtacaggtaccaacatctgtaaaa
gatatgcgctattgccaggtttcattccaagatgatcatgtgtctttggaaagtgcattt
acagtaagacctcttcctgatgaacctaaacatttaaaatgtgagttaaaaggaggaaaa
accgtacagatgggccaagagctacaaggagaaatagccagaaacacatctgaaaacaca
caaagtataagtgtaagaggcatcagatttattccaggtcctcctggaaataaggatctt
tgttttacttggcgtgagttttctgactttattcgagtgcagctaatttctggacctcca
gctaaacttctcctaatagactggccagaactaaaggagtccattccagtgattaatgga
agagatttacagaaccctcttcttgttcaactttgtgatcaatgggataatccagcacca
gtaccacatgttaaaataagtctcataaaagctagcaatttaaagctcacaccttcaaac
caacagcataaaacagatgacaagggcagggcgaatttgggagtattcagtatttttgcc
cctaggggagaacatactatgcaggttaaagccatctataataagagcaccatagaagga
cctacaattaagttaatgattcttccagaccctgaaaaacctgttcgtatcaatgttaaa
tatgacaaagatgcttcctttttagcagggggtcttttcactgattttatgattactgtt
atttctgaagatgacagtatcattaaaaatattaatccagcacgtatttccatgaaactg
tggaagctgtctagcggtgggaaccgaccaccagcaaatgcagaaacatttagttgtaat
aaaataaaagataatgacaaggaagatggctgcttctacttcagggataaagttattcct
aacaaagtggggacatattgtatccagtttggttttatgatggataaagcaaatattctc
aacagtgaacagattatagttgatgttctacctaatcagcctgtgaagttagttcctaaa
attcaaccacctacaccagctgtttctaatgttcgctcagttgccagtaggaccttggtc
agagatctacatctcagtattatggatgactacagcaatcataccggaattgatttggtt
ggcactattatagctaccattaaaggttttaatgaggaagatactgacatcccactcttt
aatgggaaagttagaacacttgaatttccttttgtgaatggttcagctgaaatcacgagt
ctagtgctggcagaaaatagtcctggaagagatagtactgaatattttattatatttgag
cctcggctaccacttttatcaagaacattagagccatatatcctaccatttatgttttat
aatgatgttaagaagcagcaacaaatggcagcacttacaaaagaaaaggaccaattatct
aaatctatttttgcatatagaggtttatttgaagccaatcaacagcttcttgatgaaatg
aaatgtaagttattttgtattcagaggccttgtaaaattatgcttcagggaatagtgagg
cagaagatgccacacattgaagcacttttgaaaagaaagctatcagaacaggatgaacta
aagaaaaaacctagaagatcatgtactcttccaaactatactaaaggcactggagatatt
ttgggaaagattgcacatctagcacaaatcgaagatgacagagctgcaatggttatttcc
tggcatctggcaagtgacatggactgtgtagtcaccctgaccactgatgctgcacgtcgt
atctacgatgaaacccaaggtcgtcagcaagtgttgccccttgattctatttataagaag
actcttccagattggaaaagacctctacctcatttccgaaatggaaaattgtattttaag
cccattggagatccagtcttcgctcgagatttgttaacatttccagataatatagaacat
tgtgaaacagtatttggtatgctgttaggagacacaattattttggataatctggatgca
gccaatcattatagaaaagaggttgttaaaattgcccactgtcctacactgctgaccaga
gatggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaagctcctcca
atggataaacttcgaggaatggtatttggagctccagtaccaaaacagtgcctgatcata
gggaaacaaatagatcttcttcaacagtatcgttctgctctgtgcaagctggatgctgtg
aataaggaccttaataatcaattagagtaccttcgtactccagatatgaagcaaaaaaag
caagaacttgatgaacaagagaaaaatctgaaactaatagagcaaaaactaggtatgact
cccacacgtaagagtaatgactcattgcgtcattcagcaaaggttgaggtggcagattgt
ccagttcctcctaaaagaatgagaagagaaaccataagacaaaataggtga
DBGET
integrated database retrieval system
