Poriferisphaera corsica: KS4_10020
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Entry
KS4_10020 CDS
T06996
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcor
Poriferisphaera corsica
Pathway
pcor03030
DNA replication
pcor03410
Base excision repair
pcor03420
Nucleotide excision repair
pcor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KS4_10020 (ligA)
03410 Base excision repair
KS4_10020 (ligA)
03420 Nucleotide excision repair
KS4_10020 (ligA)
03430 Mismatch repair
KS4_10020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcor03032
]
KS4_10020 (ligA)
03400 DNA repair and recombination proteins [BR:
pcor03400
]
KS4_10020 (ligA)
Enzymes [BR:
pcor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KS4_10020 (ligA)
DNA replication proteins [BR:
pcor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KS4_10020 (ligA)
DNA repair and recombination proteins [BR:
pcor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KS4_10020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KS4_10020 (ligA)
MMR (mismatch excision repair)
DNA ligase
KS4_10020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KS4_10020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
BRCT_2
Zn_ribbon_NrdR
Motif
Other DBs
NCBI-ProteinID:
QDU32963
UniProt:
A0A517YRW6
LinkDB
All DBs
Position
complement(1173369..1175570)
Genome browser
AA seq
733 aa
AA seq
DB search
MADTPQKRIKYLQDHLNECSRSYYVDALSLIPDKEFDSLLKELEQLEEKHPDLRTPDSPT
QRVGGQPIDGFNTVTHKKRMLSIDNTYDEADLSAWFTRVYKGLDTSDKSKVDFIFEPKID
GVAVSLRYENGILTQALSRGDGRKGDDITNNVKTIAAIPIKLTSSTKSKLTAPHVLEVRG
EIYMPNHVFDRINKQRKKVGDELLANPRNATAGALKTKDPKQVARGLAFFAHGYGEIEPI
TSITSQQNLLDTVKAFGLPTNPKIKTGNSIQDALEYIESFDQKRNSLDYATDGAVIKVND
FSQQQALGQTSKFPKWCVAYKYAAEQAETKLLKVDWQVGKTGRLTPRATMDSVPLAGTTV
QHATLHNFGEITRKDIRVNDTVIIEKAGEIIPQVVSVVTDKRPSKTTPIEEPNACPECGS
EVTREYDSRRANELAVWQRKIEKEKLKAEKEKRKPLDIPPPASLTNADISGHFCDNRECP
AQLRESIIWFVGRNQMDIDSLGEKAVIQLMDANLIKSFGDIYSLHSKRDQLLTLDRMGEK
KIDNLLAGIEKSKTQGLARVLAGLGIQHIGARAADILAQHFGNIDTLISAKSDQLADIDE
IGPITAQSIHHFLHSEAGQHIIQELKDANLTLSTPKRHTPAPSDSPFAGKTVVITGTFES
FGRKDLAEQITNLGAKVTSSVSKNTDLVLAGESAGSKLDKANKLGVTVWDEPTLLKNLNS
TPPPTPPSQPSLF
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggccgacactccacaaaaacgcatcaaatacctgcaagaccatctcaacgaatgctca
cgtagctactacgtcgatgcgctctcactcatacctgataaagagttcgattcgctgctc
aaagaactcgagcaactcgaagaaaaacaccccgatcttcgcacccccgactcaccaacc
caacgtgttggcggccagcccatcgatggcttcaacacagtcacccacaaaaaacgcatg
ctctcaatcgacaacacctatgatgaagctgatctatccgcatggtttacgcgcgtctat
aaaggacttgatacctctgataaatccaaagtcgacttcatcttcgaacccaaaatcgat
ggtgtcgccgtttctctacgttatgaaaacggcatcctcacgcaagccctctcccgtggt
gacggacgcaaaggcgacgacatcaccaacaacgtaaaaacgatcgctgcgattcctatc
aaactcacctcatcaacaaagtctaaactcaccgctcctcatgttctcgaggttcgcggc
gaaatctacatgcctaatcatgtgtttgatcgcatcaacaaacaacgtaaaaaagttggc
gacgaactactcgccaaccctcgcaacgctactgcgggcgcattaaaaaccaaagatccg
aagcaagtggcacgcggccttgccttcttcgcacacggctacggtgaaatcgaacccatc
acctccatcacctctcaacaaaatcttctcgacactgtcaaagccttcggcctacccacc
aaccccaaaatcaaaaccggcaattcaatccaagacgcgctcgaatacatcgaatcattc
gatcaaaaacgcaactcacttgactacgccactgatggcgccgtcatcaaggtcaacgat
ttttctcaacaacaagcactcggccaaacctccaaattccccaagtggtgtgtcgcctac
aagtacgctgccgaacaagccgaaaccaaacttctcaaggtcgattggcaagttggtaaa
accggccgcctcacccctcgcgcaacaatggattccgtcccgcttgctggcacgaccgtc
caacacgcaacactccacaacttcggcgaaatcacacgaaaagacatccgcgtcaacgac
accgtcatcattgaaaaagccggtgaaatcatccctcaagtcgtttctgtcgtcactgac
aaacgcccctcaaaaacaacgcctattgaggaacccaacgcctgccctgaatgtggtagc
gaggtcacgcgtgagtacgattctcgccgcgccaatgaactcgccgtttggcaacgcaag
attgaaaaagaaaaactcaaagccgaaaaggaaaagcgcaagccactcgacattccaccg
cccgcatcactgaccaatgccgacatctccggccacttctgcgacaaccgtgaatgcccc
gctcaactccgcgaatccatcatctggttcgtaggccgcaatcagatggacatcgactca
ctcggcgaaaaggcggtcatccagctcatggacgcaaacctcatcaaatccttcggtgac
atatactccctacattccaagcgtgatcaactcttaacccttgaccgtatgggcgaaaag
aaaatcgataacctccttgcaggcatcgaaaaatccaaaacccaaggcctcgcccgcgtc
ctcgctggactcggcattcaacacatcggcgcacgcgcagccgacatcctcgctcaacac
ttcggcaacatcgacaccctaatcagcgctaagtccgatcagctcgccgacattgacgag
atcggccccatcactgctcaatctattcaccactttctccacagcgaagccggccaacac
atcatccaagaacttaaagacgccaacctcacactcagcacccccaaacgacatacccct
gccccatccgattctccctttgcaggcaaaaccgtcgtcatcactggcacattcgaatcc
tttggacgaaaagatctcgccgagcaaatcaccaacctcggtgcaaaagtcacctcctcc
gtctctaagaacaccgacctcgtcctcgcaggcgaatccgctggctcaaaactcgataaa
gccaacaaacttggtgtcactgtctgggacgaacccacactactcaaaaatctcaacagc
actcccccaccaacaccgccatctcagccctcactcttctaa
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