Prevotella communis: L6468_06975
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Entry
L6468_06975 CDS
T09070
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcou
Prevotella communis
Pathway
pcou03030
DNA replication
pcou03410
Base excision repair
pcou03420
Nucleotide excision repair
pcou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L6468_06975 (ligA)
03410 Base excision repair
L6468_06975 (ligA)
03420 Nucleotide excision repair
L6468_06975 (ligA)
03430 Mismatch repair
L6468_06975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcou03032
]
L6468_06975 (ligA)
03400 DNA repair and recombination proteins [BR:
pcou03400
]
L6468_06975 (ligA)
Enzymes [BR:
pcou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L6468_06975 (ligA)
DNA replication proteins [BR:
pcou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L6468_06975 (ligA)
DNA repair and recombination proteins [BR:
pcou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L6468_06975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L6468_06975 (ligA)
MMR (mismatch excision repair)
DNA ligase
L6468_06975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L6468_06975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
HHH
PTCB-BRCT
Auto_anti-p27
HHH_3
UPF0758_N
BRCT_2
zf-tcix
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UKK63489
LinkDB
All DBs
Position
1758541..1760538
Genome browser
AA seq
665 aa
AA seq
DB search
MDEKQRIEQLRQELHEHNYRYYVLNQPVIGDQEFDLMMHELQDLEARHPEMADPNSPTQR
VGSDLQTGFRQVAHRYPMLSLANTYNEQDVRDWYESVRKGLAGEDFEVCCEMKYDGLSIS
LTYVDGHLMQAVTRGDGVQGDDVTQNVKTIRTIPLILPGKGYPREFEIRGEILMPWASFE
RLNAEREAAEEPLFANPRNAASGTLKSLDSRVVAQRSLDAYLYYLLGEELPADGHFENLE
AARNWGFKISEGMRKVKTVEEIIDFINYWDTERKNLPVATDGIVLKVNSLRQQRSLGYTA
KSPRWAIAYKFKAERECTRLLEVTYQVGRTGAVTPVANMEPVQLAGTVVKRATLNNEDFI
RSFDLHIGDMVYVEKGGEIIPKIVGVNIDERPIISQPVQFIKRCPECGTPLVRYEGEAAW
YCPNDAGCPPQIKGRIEHFIARKAMNIDSLGPETVNEYYQRRIIHNIADLYDIEVQQING
DGSRTKSAQRIVNGIQKSKEVPFERVVFALGIRFVGETSARLLARHFKSMDALMNAGLEE
LQEVEGIGEVMAKSIISYFHDPENQTIIERLRGYGLQMALSEEQTMPASDKLAGQSIVIS
GVFAHHSRDEYKLIIEQNGGKNVGSISGKTSFILAGENMGPSKLEKAQKLGVRIVSEDEF
LEMLA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaaacaaagaatagaacaactgcgacaagagttgcatgagcataactatcgc
tattatgtgctgaatcagccggtgattggtgatcaggagtttgatttgatgatgcatgag
ttgcaggacttggaagcacgtcatcccgaaatggctgatcctaactcgccaacccagcgc
gtgggcagtgacttgcagacgggattccgtcaggtagcccaccgttatccgatgctttcg
ctggcaaatacctacaatgagcaggacgtacgtgactggtatgaaagtgtgcgtaaggga
ttggccggcgaggatttcgaagtgtgctgcgagatgaaatacgacggactgagtatctcg
ttgacttatgtcgatggacatctgatgcaggccgtgacacgtggcgatggtgtgcagggt
gatgatgtgacgcagaatgtgaagaccattcgcaccattccgctgatacttccaggaaaa
gggtatccaagggaatttgagattcgtggagagattctgatgccgtgggcttcgttcgag
cgactgaatgctgaacgtgaggctgctgaggaaccgctctttgccaatcccagaaatgcg
gccagtggtaccttgaagagcttggactcaagggttgtcgcacaacgctcgctggatgcg
tatctctactacttgctaggcgaggaattacctgccgacggacactttgagaacctggaa
gcagcccgcaactggggattcaagatatccgagggtatgcgcaaggtgaagaccgtagaa
gagattatcgacttcattaactattgggataccgaacgcaagaacctgcctgttgctacg
gatggtattgtgctgaaagttaactcgttaagacagcaacgttcattaggatatacagcc
aagagcccgcgctgggcaatcgcctataaattcaaggctgagcgtgaatgcacgcgtctg
ctggaagtgacttaccaggtaggtcgtactggcgcggtgacgcctgttgccaacatggaa
cctgtacagctggcaggtactgtcgtgaagcgtgcaacgctgaataacgaggattttatc
cgtagtttcgacctccacatcggtgatatggtctatgtggaaaagggtggtgagattatc
cccaagattgtgggtgtgaacattgatgagcgtcctatcatctcgcagcccgtacagttc
atcaagcgctgtccggaatgtggcacaccgttggtgcgctatgagggcgaggctgcatgg
tattgtcccaacgatgccggttgtccgccgcagattaagggacgcatcgaacatttcatt
gcccgtaaggcgatgaatatcgattctcttggtcctgagaccgtgaatgaatactatcag
cgcaggattatccataacattgctgacttgtatgatatcgaggtacagcagattaatggt
gacggctcgcgtacgaaatcggcccagcgtatcgtcaacggtatacagaaatcgaaggaa
gtgcccttcgagcgcgttgtcttcgcactgggtatccgttttgtaggtgagacctcggct
cgtttgctggcacgccacttcaagtcgatggatgcattgatgaatgccggactggaggaa
ctgcaggaggtggaaggtatcggtgaggtgatggcaaagagtatcatttcctatttccat
gatccagagaaccaaacaatcatagaacgtctccgcggatacggtttgcagatggcatta
tcggaagagcagacgatgcccgcaagtgataagctggcaggtcagagtatcgtgataagc
ggtgtgtttgcccatcatagccgtgatgagtataaactcattatcgagcagaatggaggt
aagaatgttggttcgattagtggtaagacctctttcatccttgccggagagaacatggga
ccatcgaagctggagaaagcccagaagttgggcgtgaggattgtgagtgaggatgaattc
ctggagatgttggcatga
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integrated database retrieval system
