Pyrus communis (pear): 137730930
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Entry
137730930 CDS
T10779
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
137730930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcox03400
]
137730930
Enzymes [BR:
pcox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
137730930
DNA repair and recombination proteins [BR:
pcox03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
137730930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
137730930
NCBI-ProteinID:
XP_068326042
LinkDB
All DBs
Position
4:complement(18898253..18916484)
Genome browser
AA seq
1163 aa
AA seq
DB search
MATDETKFSVLCSLFNWMQKSKTSTLKRSKFRKFLDNFCKPADYFSSIRLILPSLDRERG
SYGLKESVLATCLIDALGIARDSEDALRLINWRKGGAKTGANAGNFSLVAAEVLQRRQGL
SSGGLTIKELNDLLDRLASSENRAEKTSVLSTLINKTNAQEMKWIVMIILKDLKLGTSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLSDRNQRHKRQDIEVGKAVRPQLAMRVGDANIAW
KKFHGKEVVVECKFDGDRIQIHKNGSEVHYFSRNFLEHSEYAHAMSDIIVENVLADRCIL
DGEMLVWDTSSNRFAEFGSNQEIAKAARDGIDSDRQLCYVAFDILYVGDTSVIHQSLKER
HELLQKVVNPLKGCLEILVPNRGLNAHRNEGEPCWSLIASNVDDVEKFFKDTIENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGVVAQFLVGLAER
PVSNTYPRRFVSFCRVGTGLSDEEIEAVATKLKPYLRKYEYPKKAPPSFYQVTDNSKERP
DVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFIELV
QAGNGTTQRGTDYGGLQDTKKRSKKSPRKEEKRNLSIVPSHFIQTDVSGVKEDTLLFSNM
MFYFVNVPPAHSLDSLHKLVVENGGTFSMNLNNAVTHCVAADGKGIRYQAAKRHGDIIHI
SWVLDCCSQKKLLPLQPKYYLFLSDSSKKKLQEEIDDFSDSYYWDLDLAEIKQLLSNIHR
SEDSKVVDYYKKKYCPVDRWSRFHDCRIYFKSSIHSLKPDWEVILGLTLRRLRIEVLRGG
GRVTDSLVQATHLVVLSVQGPDGFETLLRSFTEGDKRYLHSKRLHIVGSQWLEDCLERDQ
RLQEETYSLKPNGLEESNVEEWKHDMGLEEAPCDVDAVENHNSSFPNRKGKEIEVKAAPE
NCKMLESPERGSKRKRGRPARTSLNKGKSTVNQARRARARIGRKPAKISGNESEEGGSHD
STSLGEEVDLGERIHGTVGQESTDIQENEAMKDSESLRRGKAVEQDVAEDIRIEEPYKIA
EIKMKEKQNVQESKKREELEATADPVEAMLFDMIPSLGMKKAETTYTSTRDEKPAPDPIP
NAGPSKKKKVSYKDIASELLKDW
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgacgagaccaagttcagcgtgctctgcagcctcttcaactggatgcagaaa
tccaaaacctcaaccctaaagcgctccaaattccgcaaatttctcgacaatttctgcaaa
cccgccgattacttcagctccattcgccttattcttcccagcctcgaccgcgagcgcggc
tcctacggcctcaaggagtccgtgcttgccacctgcctcatcgacgcccttggcatcgcc
agagactccgaggatgctctccgcctaattaattggcgcaagggtggcgccaagaccggc
gccaatgccgggaacttctccctcgtggcggcggaggtgttgcaacgtagacagggtttg
agttcaggtggactaacaatcaaggagttaaatgacttgcttgatcgtttagcttcgagt
gaaaacagggcagagaagacttcagttctttcgaccttgataaacaagacaaatgcacag
gaaatgaagtggattgtcatgatcattcttaaagatctgaagctgggaactagtgaaaag
agcatctttcacgaatttcatccagatgctgaagatttgtttaatgtcacatgcgacttg
aaattggtctgtgaaaagctcagtgatagaaatcagcgccataaacgccaggacattgaa
gttggaaaagctgtgcgcccacaactagctatgagagttggtgatgcaaatattgcatgg
aaaaagtttcatggtaaggaagtggttgttgagtgtaaatttgatggcgatcgcatccaa
attcataagaacggaagtgaagtacattacttctcaaggaattttcttgagcactctgaa
tacgcacatgcaatgtcagacattatcgtagaaaatgtgctggctgataggtgtattctt
gatggtgagatgttggtctgggacacatcttctaatcgttttgctgagtttggttcaaat
caagaaatagccaaggcagcaagggacgggattgacagtgatagacagttgtgctatgtt
gcattcgatatcctctatgttggagatactagtgtgattcaccagagcttgaaggaacga
catgagcttctccagaaagttgtgaatccattgaagggttgtttagagattttagtaccc
aatcgtggtcttaacgctcaccgtaatgaaggggaaccttgctggtcgcttattgctagt
aatgtggatgatgttgagaagtttttcaaagataccatcgaaaatagagatgaggggatt
gttttgaaggaccttggttcgaaatgggaacctagtgatcgtagtggaaaatggttaaaa
ttaaagcctgactacattcgtgcaggttctgatctggacgttcttatcataggaggatac
tatggctctggacgtcgtggaggggtggtagctcagttcttggtgggtcttgctgagcgt
ccggtttcaaatacatatcctagaaggtttgtatccttttgcagagtgggcactggactt
tctgatgaagagatagaagctgttgcaacaaaattaaagccgtatttgaggaaatatgag
tacccaaaaaaggcaccaccaagtttttatcaagtaacagacaattctaaagagagacca
gatgtttgggttgaaagccctgagaaatcaataatactttctataacgagtgacatcaga
actataaagtctgaggtttttgctgcaccgtacagcctgagatttccacgtattgatcgt
gttagatatgataaaccttggcatgaatgccttgacgtgcagtcatttatagagcttgta
caagcaggcaatgggaccacacaaagggggacggattatggtggtctgcaggatactaaa
aagagaagcaagaagtcccctagaaaggaagagaaaagaaatctgtctattgtcccctct
cattttattcagactgatgtttcgggcgtgaaggaggacacattactattttcaaatatg
atgttttactttgttaatgtgccacccgctcattctcttgattccttgcacaagcttgtt
gttgagaatgggggtactttctctatgaatttaaataatgcagttacacactgtgttgca
gctgatggcaaagggatcaggtatcaggcagcaaagcgtcatggagatatcattcatatc
tcttgggtgttggattgttgttctcaaaagaaactccttccattacagccaaagtactat
ctcttcttatctgactcttctaagaagaagttacaagaagagattgatgatttttctgac
tcgtactactgggatcttgaccttgcggagataaagcagcttttaagcaacattcataga
tcagaggactccaaagttgttgactattacaagaaaaaatactgtccggtggatagatgg
tctcgctttcatgactgccgcatttactttaaatcctcaattcattccttgaagccggat
tgggaagttatcttaggactcacactgagaaggttgaggattgaagttctcaggggtggt
ggcagagtcactgacagtcttgttcaggcgacccatttggtagtcttgtccgtgcagggt
cccgatggatttgaaactttattacgaagtttcactgaaggagacaaacgatatctgcat
agcaaaaggttgcatattgttggatctcaatggttggaagactgcttggaaagggaccaa
agattgcaagaggaaacatatagcttaaaacccaatgggttggaagaatccaacgttgaa
gaatggaaacatgacatgggtctagaagaagcaccctgcgatgtggatgcggtggaaaac
cacaattcttcttttcctaaccggaaaggaaaagagattgaagtaaaagcggctccagaa
aactgtaagatgttggagtcacccgagaggggaagcaaaaggaaaaggggaagacctgct
cgcacaagcttgaacaaaggaaaatcaactgtcaaccaagctagaagagcacgggcgcgt
attggaaggaagccagctaaaatatctggcaacgagtctgaagaaggtggctctcatgac
agtacatcacttggggaagaggttgatctgggagaaagaattcacggaacggtaggtcag
gaaagtacagacatccaagaaaatgaagcaatgaaagattctgaatcgttacgaagaggc
aaagcagttgagcaagatgtcgccgaggacattagaattgaagagccttacaagattgct
gaaatcaaaatgaaggagaaacaaaacgtccaagagagtaaaaaacgggaggaacttgaa
gctacggctgatcctgttgaagccatgttgtttgacatgattccaagtcttggtatgaaa
aaagctgaaactacatatacgagtactcgagatgagaaaccagcaccggatccgataccg
aatgcaggaccttcaaagaaaaagaaagttagttacaaggatattgctagtgagctgcta
aaggattggtaa
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