Pyrus communis (pear): 137745134
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Entry
137745134 CDS
T10779
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137745134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137745134
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137745134
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_25
AAA
Arf
AAA_23
ORC-CDC6-like
AAA_30
nSTAND3
AAA_7
Zeta_toxin
TsaE
AAA_28
Motif
Other DBs
NCBI-GeneID:
137745134
NCBI-ProteinID:
XP_068341123
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Position
9:3713057..3714594
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AA seq
321 aa
AA seq
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MGVNPNSEPSIEINGLKFTYPGINGHPPPGSKPLIEDFNLTLNAGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTALTGSGDLSYLGGEWRRDVAFAGFDVPIQMDVS
ADKLISGVAGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPYKVLLLDEI
TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHIAYVANGKLQLAMPMEK
VREISKLSLMRTVESWLRKEREEERKRRKERKAKGLPEFEQPNEGSGDVRSVNNGWAAGR
LNSTIAGEENFVFSSNRVLRQ
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgaatccaaactccgagccgtcgatcgagatcaacggcctaaaattcacctac
ccaggaatcaacggccacccgccgccgggatccaagccgctgatcgaggacttcaatctc
accctcaacgccggcgaccgatgcctcctcgtcggatccaacggcgcggggaaaaccacg
atcttgaagatcctgggcggcaagcacatggtcgagccccacatggttcgcgtgctcgga
aggtcggcgtttcacgacaccgccttgaccggctccggcgacctctcgtatctcggcgga
gagtggcggcgagatgtcgcattcgccgggtttgatgtcccgattcaaatggacgtttcg
gccgataagttgattagtggggttgcggggatcgacccacaaaggagagcagagctgata
aaggttttggatattgatctttcatggcggttgcacaaggtgtccgatggtcagcgaaga
cgagtgcaaatctgtatgggtctgctcaagccatacaaggttcttctgctagacgagata
acggtggacctcgatgtgctagcaagagctgaccttctcaagttcttgaggaaggaatgc
gaagagagaggcgccacgatcatttatgctacgcatatatttgacgggttggaaaattgg
ccttcgcatatcgcttatgttgcgaatgggaagttgcagctagcaatgccaatggagaaa
gttagggagatctccaagttgtcactaatgaggacagtcgagagttggctgaggaaggag
cgcgaggaggagaggaagagaaggaaggagagaaaggcgaagggtcttccggagtttgag
caaccaaatgagggaagcggtgatgttcgttcagtgaacaatggttgggcagctggacgc
ctgaattccaccattgccggagaagagaactttgtcttcagctcaaacagagttctcagg
caataa
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