Pseudomonas citronellolis: PcP3B5_58070
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Entry
PcP3B5_58070 CDS
T04637
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcq
Pseudomonas citronellolis
Pathway
pcq03030
DNA replication
pcq03410
Base excision repair
pcq03420
Nucleotide excision repair
pcq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PcP3B5_58070 (ligB)
03410 Base excision repair
PcP3B5_58070 (ligB)
03420 Nucleotide excision repair
PcP3B5_58070 (ligB)
03430 Mismatch repair
PcP3B5_58070 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcq03032
]
PcP3B5_58070 (ligB)
03400 DNA repair and recombination proteins [BR:
pcq03400
]
PcP3B5_58070 (ligB)
Enzymes [BR:
pcq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PcP3B5_58070 (ligB)
DNA replication proteins [BR:
pcq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PcP3B5_58070 (ligB)
DNA repair and recombination proteins [BR:
pcq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PcP3B5_58070 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PcP3B5_58070 (ligB)
MMR (mismatch excision repair)
DNA ligase
PcP3B5_58070 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PcP3B5_58070 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH_5
HHH
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AMO79170
LinkDB
All DBs
Position
6474161..6475825
Genome browser
AA seq
554 aa
AA seq
DB search
MKALLASALLLLPSLSLACPDWPEQRAREELLGLRQQLEAWDQAYHQRGESPIADELYDQ
ARQRFSLWRSCYPQLAIEPPPPLPATRGKLRHPAAHTGLDKAADANEVRQWMAGREDLWV
QPKVDGVAVTLVYQDGELVQAISRGDGIHGQDWTANARRLPAVPQRLPATGRLVLQGELY
WRLPGHVQAQKGGLGARGKVAGLMARSEPGEQVSQVGLFVWELPHGPGNMTQRLERLKAL
GLADSAALTLPVTGFEDAQRQREHWYRSPLPFASDGIVLRQGSRPAAKAWQAGSASWALA
WKYSYRQALAEVRRVHFRIGRTGRVTPLLELQPVTLDERRIAQVSLGSTRRWQALDIRPG
DQVAIALAGLTIPRVESVVWRSPQRLAVEPPQPGRYHALSCWRATPGCEEQFLARLAWLG
GEQGLALEGVGPGTWQALLEAGQLAGLLDWLELPPETLRQLPGFAEHSGERLHAQFRAAR
QRPFQHWLRALGVPQVDSLPATEGWAELSTRQASDWRQLPGVGPVRARQLQAFFADHEVQ
RLGAQLAAAGVAGF
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccctgctcgcctcagccctgctgctcctccccagcctctccctggcctgcccc
gactggcccgaacagcgcgcccgcgaagagctgctgggcctgcgccagcaactggaagcc
tgggaccaggcctaccaccagcgcggcgaaagcccgatcgccgacgaactctacgaccag
gcccggcaacgcttcagcctttggcgcagctgttatccacagctcgccatcgagccgccc
ccgccgctgccggccacccgcggcaagctgcgccaccccgcagcccataccggcctggac
aaggccgccgacgccaacgaagtccgccagtggatggccgggcgcgaggacctctgggtg
cagcccaaggtcgatggcgtggctgtgacgctggtctaccaggacggcgaactggtccag
gccatcagccgtggcgacggcatccatggccaggactggaccgccaacgcccgccgcctg
ccggccgtgccgcaacgtctgcccgccacggggcggctggtgttgcagggcgagctctac
tggcgcttgccgggccacgtgcaggcgcaaaagggcggcctcggcgcccgcggcaaggtc
gccggactgatggcgcgcagcgagccgggcgaacaggtttcgcaggtcggcctgttcgtc
tgggaattgcctcacggccccgggaacatgacgcaacgcctggagcgcctgaaggcgctg
ggccttgcggacagcgcggccctgacgctgccggtgacgggcttcgaggacgcccagcgc
cagcgcgagcactggtaccgcagtcccctgcccttcgccagcgacggcatcgtcctccgc
cagggctcgcgccccgccgcgaaggcctggcaggccggcagcgccagttgggcgctggcc
tggaaatactcctaccgccaggccctggccgaggtgcgccgggtgcatttccgcatcggc
cgcaccggacgggtgacgccgctgctggaattgcagccggtgacactggacgagcgccgc
atcgcccaggtcagcctcggctcgacgcggcgctggcaggccctggacatccgccccggc
gaccaggtggccatcgccctggccggcctgaccatcccgcgcgtggaaagcgtggtctgg
cgctcgccgcagcgtcttgcggtagagccgccgcagcccgggcgctaccacgcgctcagt
tgctggcgggcaacgcccggctgcgaggaacagttcctcgcccgtctcgcctggctgggc
ggcgaacagggtttggccttggaaggcgtgggaccgggcacctggcaggcactgctggaa
gccggccagcttgccggcctgctcgactggctggaactgccgccggaaaccctgcgccaa
ttgccgggcttcgccgagcacagtggcgaacgcctgcacgcccagttccgcgccgcgcgg
caacgtcccttccagcactggttgcgggcgctgggtgtgccccaggtcgacagcttgccg
gccaccgaaggttgggccgaactgagcacccggcaggccagcgactggcgccagctgccg
ggcgtcgggccggtccgggcccggcaactgcaggccttcttcgccgaccacgaggtgcag
cgcctgggcgcccagctcgccgcggccggggtagccggcttctga
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