Porphyromonas crevioricanis: NCTC12858_01873
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Entry
NCTC12858_01873 CDS
T05510
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcre
Porphyromonas crevioricanis
Pathway
pcre03030
DNA replication
pcre03410
Base excision repair
pcre03420
Nucleotide excision repair
pcre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12858_01873 (ligA)
03410 Base excision repair
NCTC12858_01873 (ligA)
03420 Nucleotide excision repair
NCTC12858_01873 (ligA)
03430 Mismatch repair
NCTC12858_01873 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcre03032
]
NCTC12858_01873 (ligA)
03400 DNA repair and recombination proteins [BR:
pcre03400
]
NCTC12858_01873 (ligA)
Enzymes [BR:
pcre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC12858_01873 (ligA)
DNA replication proteins [BR:
pcre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12858_01873 (ligA)
DNA repair and recombination proteins [BR:
pcre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC12858_01873 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12858_01873 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC12858_01873 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12858_01873 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
HHH
Auto_anti-p27
PTCB-BRCT
BRCT_2
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
SQH73992
UniProt:
A0A0A2FIW8
LinkDB
All DBs
Position
1:2118915..2120945
Genome browser
AA seq
676 aa
AA seq
DB search
MESTAQQITRLREEIRQHEYLYYVRSAPLISDQAYDALMKQLEELETSHPELITADSPTQ
RVGADRSEGFRLVAHRYPMLSLSNTYEYGEVAAFYRRVSEALGGEAFVITAELKFDGLSI
SLIYRQGVLKQAVTRGDGLQGDDVTANVRTIRSIPLRLRGAGYPDELEVRGEILLPFAEF
ERLNRIRIEQGEPPFANPRNAASGTLKQLDPAIVAERNLDAYFYYLPGNTELDDSHYSRL
QHCKEWGIKVSEAVGCCHSLEEVYDFLSYWDIRRKDLPVATDGVVLKVDSKEQQERLGYT
AKSPRWAIAYKYQAERVRTRLLSVEYQVGRTGAITPVANLEPVLVSGTVVKRASLHNADI
IRALDLHSGDYVYIEKGGEIIPKIVSVDTEIRSSEGSPITFISHCPDCGSKLMRFEGEAA
YYCPNRRNCPTQQKARIEHYASRKAADINIGPETIERLYALGLVCDVADLYNLRSEDLLL
LPGFATKASKKLVAAIETSKHRPLSALIFGLGILHVGETVSRRLAATFRSIDRLAQSSFE
ELCRLPDIGEVIARSIVDFFADPLNRELIDRLSAAGVCLNPPQEDFEETRGETLKEGQLL
QGRTVVISGVFARHSREEYKTLLERLGAKVSSSISSKTFFLLAGENMGPAKQEKALALGI
EIMDEETFTARYIDRP
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaatccacagctcaacaaataacccgtctgcgtgaggaaatcaggcaacacgaatac
ctctactatgtacgctcggcaccacttatcagcgaccaggcatacgatgccttgatgaaa
cagctggaggaactcgaaacatctcacccggaactcataacagcagattcccccacgcaa
cgtgtcggtgccgatagatcggaaggatttcgcttggtcgcacatcgctacccaatgctt
tcgctcagcaatacctatgaatacggagaagtagcagctttctaccgccgggtatctgaa
gccctcggtggagaagctttcgtaatcacagccgagttgaaattcgatgggctctccatc
tctctcatctatcgacaaggtgtattgaagcaggctgtcactcggggagatggtctacaa
ggtgatgatgtaacagccaacgtacgtaccattcgctctattcctctgcggctaagggga
gcaggatatcccgatgaattagaagtccggggagaaatcctacttccatttgctgaattt
gagcgactcaaccgtattcgcatcgagcaaggagaacctccttttgccaatcctcgcaat
gcagccagcggtacactaaagcagcttgatccagctatcgtagccgaacggaacttagat
gcatacttctactacctgccgggcaacacggagttggacgacagtcactacagccgacta
cagcattgcaaagaatgggggatcaaagtatcggaagcagtaggatgttgccactcattg
gaagaagtctacgactttctgtcgtattgggatattcgtagaaaagacctacctgtggca
acagatggagtagtactcaaagtagactccaaagagcagcaagagcgactgggctacacc
gccaaaagccctcgctgggccatcgcctataaataccaagccgaacgtgtgcgtactcgc
ctactttcggtggaatatcaggtcggacgtaccggggccatcacaccggtagccaatttg
gagccggtactggtcagtggtacagtagtcaagcgcgcctcattgcacaatgccgacatt
atacgtgccctcgacttgcatagcggagattatgtatacatagagaaggggggagagatt
atccccaagatcgtgagtgtcgatacagaaatcaggagtagtgagggcagccccattaca
ttcatatctcattgccctgactgtggaagcaaactgatgcgctttgaaggagaggcagcc
tattattgccccaatcggcgcaattgccctacacaacaaaaagcccgtatagagcactac
gcctcacgaaaggctgccgacataaacatcggtcctgaaacgatcgaacggctatatgct
ctgggcttggtctgcgatgtggccgacctctacaacctgcgctccgaagatttactccta
ctccccggttttgccaccaaagccagtaaaaaactggttgcagccatagagacctccaaa
cacagacctctctcagctttgatcttcggtttgggtattcttcatgtaggagagaccgtt
tcacgccgtctggctgctactttccggtctatagatcgccttgcccaaagcagcttcgag
gaactatgccgcttacctgacatcggagaagtcattgcacgctccatcgtagacttcttt
gctgaccctctcaaccgggagttgatcgatcggctctcagctgccggtgtttgtctcaac
cctcctcaagaggatttcgaggagacacggggggaaacgctcaaagaagggcaattactg
caagggcgtactgtagtgataagtggggttttcgctcgccatagtagagaagaatataag
actctgctggagcgacttggagcaaaagtgtcttcgagtatatccagcaaaacctttttt
ctcttggccggagagaatatgggacctgccaagcaggaaaaggctctggctcttggaata
gaaatcatggacgaagagacctttactgctcggtatattgatcgaccataa
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