Pelecanus crispus (Dalmatian pelican): 104034427
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Entry
104034427 CDS
T08340
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Pathway
pcri04622
RIG-I-like receptor signaling pathway
pcri04623
Cytosolic DNA-sensing pathway
pcri05164
Influenza A
pcri05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
104034427 (DDX58)
04623 Cytosolic DNA-sensing pathway
104034427 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104034427 (DDX58)
05168 Herpes simplex virus 1 infection
104034427 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pcri04054
]
104034427 (DDX58)
Enzymes [BR:
pcri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104034427 (DDX58)
Pattern recognition receptors [BR:
pcri04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
104034427 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_19
AAA_25
AAA_22
Motif
Other DBs
NCBI-GeneID:
104034427
NCBI-ProteinID:
XP_009485701
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
NGKDVDDEMTDASENSFETMMTFSEEAECDNNLSENLCSASESIYQSSPVYEPKMARSYQ
TELAQPAINGKNTLICAPTGSGKTFVAVMICEHHFQNVPAGRKAKVVFLATKVPVYQQQK
TVFKQHFERSGYFVQGVSGETVANVSVEKVIQDSDIIVLTPQILVNSFEEGILTSLSIFT
LMIFDECHNTTGNHPYNVLMTRYLEQKFDSSANQLPQIVGLTASVGVGNAKTVKETIEHI
CTLCSYLDIQAISTVRENKEDLQRFRNKPETYVRWVKMRVQNHFADIISGLMSETEALMK
KIYSVDTMSQISKNDFGTQKYEHWIVATQKKCKLLQLPDKEEESSICRDLFICTEHLRKF
NDALIISEDARIEDALAYLTEFFKNVKNGPYTELEKQLTAKFQEKEPEMIALSKDESNEN
PKLEELACILDEAYRYNPQTRTLLFAKTRALVVALKKWIEANPLLSHIKPDVLMGHGRRD
QKTGMTVPMQKGILDAFKTNKDSRLLIATSVADEGIDISECNLVVLYEYFGNVTKMIQVR
GRGRAKDSKCILVTNKTEVVENEKHNHYKEEMMNEAIEKLQDWDKTTFARKIHDLQMKEK
VLRDSRKKETRPKVVEGKKNLLCGKCKAYACSTDDIRVIKESHHTVLGDAFKERYVTKPH
QKCIRFDCFEKKSKMHCQNTNCQHDWGIIVKYKTFDNLPVIKIKSFVVENVETGTQMDFQ
KWKNINFSLKNFDVEETCT
NT seq
2222 nt
NT seq
+upstream
nt +downstream
nt
ataatggcaaagatgttgatgatgaaatgacagatgcctctgagaacagctttgaaacta
tgatgacattttctgaagaagcagaatgtgataataatctcagtgaaaacctctgttcag
cttcagaaagcatctatcagtcttcacctgtttatgaaccaaagatggctcggagctacc
agactgaacttgcgcagcctgctatcaatgggaaaaacacattgatatgtgcccccacag
gatctggaaaaacttttgtggcagttatgatttgcgaacaccatttccagaacgtgcccg
caggacgaaaggcaaaagttgtctttcttgcaactaaagtgccagtgtaccaacaacaga
aaactgtattcaagcagcattttgaaagaagtggatactttgttcaaggagttagtggtg
aaacagttgcaaatgtctctgtagaaaaggttatacaggacagtgacataattgtgctga
cgccccagattcttgtgaatagctttgaggaagggatccttacttctctctccatcttca
ctctgatgatatttgatgagtgccacaacactacgggcaaccacccttacaatgtgttaa
tgaccagatatctggaacaaaaatttgactcctctgcaaaccagctgcctcagattgtag
gtttaactgcttccgttggagttggtaatgccaagaccgtcaaggaaacgatagaacaca
tctgtacactctgctcctaccttgacatacaggccatatccactgtcagagagaacaaag
aggatctgcagagattcagaaacaagccagaaacatatgtcagatgggttaaaatgcgag
ttcagaatcactttgcagacattatctcaggtctgatgtctgagacagaggcgttgatga
agaagatttactcagtggatactatgtctcaaatcagcaagaatgattttggaacacaga
aatatgaacactggatagttgccactcagaagaaatgcaaactgttgcaactgccagata
aggaagaggaaagcagcatttgtagagaccttttcatttgcactgaacacctgcggaaat
tcaacgatgctctcatcatcagtgaagacgcccgcattgaagatgctttagcctacctaa
ctgaatttttcaaaaatgtcaaaaatggaccatatacagagttagagaagcaactaacag
ccaaatttcaagagaaagaaccagaaatgattgccctttcaaaagatgaatcaaatgaga
atcccaagctggaagagcttgcttgcatcctggatgaagcataccgctataacccacaga
ctcgcactcttctctttgctaagacaagagccttagtagttgctttgaagaagtggatag
aagcaaaccctctacttagccacataaagccagatgtgttgatgggtcatggaagaagag
atcaaaaaacaggtatgaccgtcccaatgcaaaagggtatactggatgcattcaaaacca
acaaagacagcagactgctaattgctacatctgttgctgatgaaggcattgatatttctg
agtgcaaccttgttgtgctctatgaatacttcggcaatgtcaccaaaatgatccaagtca
gaggtcgtggaagggcaaaagacagcaagtgcatccttgtgacaaacaaaacagaagtgg
ttgagaatgagaaacacaaccattataaagaagaaatgatgaatgaagctattgaaaagc
tacaggattgggataaaacaacatttgcaagaaagatacatgacctgcaaatgaaggaaa
aggtattacgagattccaggaagaaagaaacaagacctaaggtagtagaagggaaaaaaa
atcttctgtgtggaaaatgcaaagcatatgcctgcagtacagatgacatcagagttataa
aggaatctcatcacactgtcctaggagatgcgttcaaggagcgttatgtaacaaagcctc
accagaaatgcatccggtttgattgttttgagaaaaaaagcaagatgcattgccaaaata
ctaattgccagcatgactggggaatcatagtgaagtacaagacatttgataatctaccag
tgatcaaaatcaaaagctttgtagtagagaatgttgaaactgggacacaaatggattttc
agaaatggaaaaatattaatttttctttgaagaactttgatgttgaagaaacatgcacct
ga
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