Phascolarctos cinereus (koala): 110197058
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Entry
110197058 CDS
T05867
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pcw
Phascolarctos cinereus (koala)
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcw03036
]
110197058 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pcw03400
]
110197058 (SMCHD1)
Chromosome and associated proteins [BR:
pcw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110197058 (SMCHD1)
DNA repair and recombination proteins [BR:
pcw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
110197058 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
110197058
NCBI-ProteinID:
XP_020826303
UniProt:
A0A6P5IZ16
LinkDB
All DBs
Position
Unknown
AA seq
2017 aa
AA seq
DB search
MAAAGGGGGGGGGGGGGGESGRRTVFLFDRREEKSEVGERALHLDEGGGFSSFRGAVCQA
LGISSGEKFVITTTNRKEITVDNFNENVQDGVTLYLLQSVNQLLLSATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIHIKLLFDESQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRKGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPSDSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSAHITNDDE
RFLHSLILEEREKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNETH
AATKEVGPFNNIDMEISMFEKGKVPKIINLREIKDDMQTLYINTASDSFEFKSHVEGEGV
VEGIIRYHPFLYDKETYPDDPCFPSKLKDDDDDDDCFIVEKGARGKRPIFECFWNGRLIP
YTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRTDLPSKRMQSPWATYSA
IEWDGKTYKAGQLVKTTKTLPLFYGSIVKFFLYGDHDGDVYATGGEVQIAMEPQALYDEI
KTVPITKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNEVKPAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMEN
IQKLGNYTLKLQVVLNESNADTYAGRPLPSKTFKFSVKEGKPEKFSVGLLDPPFRVGVPF
SIPLELQDEFGHTTQLVTDIKPVLEASGLSLQYEDISKGPNCVIRGVTAKGHVSSYQGKN
FSLKVILPGLKEESQILKIRLLPGPPHQLKVKPDSDFLVIENGTAFPFQVEVLDESGNIT
AQPKLIVHCKFLGAPNLPVYSVDCSNAGTSILTGPAFHVQNIKKDHILKARIEIPSCKDV
PAVEKTIRLLPSSRVAKLQIFSVEGQKAIQIKHQDEINWIAGDVMHNLIFQMYDEGEREI
ILTPALAEKIKVNWTPEINKEQLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTV
RPLPDEPKQLKCKLKGGKTIQMGQELQGEIEVIITDQYGNQIQTFTSSCLTSLGISGNGL
DKSSLKITWQDSTQTIIIKGIKFSPGPPGNKELCFAWREFSDFLRVQLISGPPAKLLLVN
WPELTEPIPVINGKELPNPLTIQLCDQWENPSPVPLVKISLVKAAILKLSPSNQQHKTDD
SGRADLGVFTVSAPRGEHTIQVKATYNKNSLEGPTIRLMVLPDPEKPVRLNVKYDKDVSF
SAGDIFTDFMVSVISEDESIIKNINPTRISMKMWKLSGSGNRQPANVETFNCSKIKDNDK
EEGFFYFRDKVIPNKVGSYCIQFAFMVDKSSVLNSDQILVDVIPNEPVKLVPECLPSTPA
VSNVPPIANRTLVKDLCLNIVDEHNNRTGTNLIGKIIAKIKSSNDEDTEIPLFNGKVRVV
EFPFIKGSAEIKDLVLAENSPGRDSAEYFIVFEPQLPALSRALEPYRLPFMFYNDFRKQQ
QMATLTKERDQLSQSIVLYRNLFDASHQLINEMKCQAQEAGSKEVHLRNELKKHHINIPT
PPQLSHIDMLLKQKLSEQEGLKKQPRRSCTLPNCPKGNPDILGKIAHLAQIEDDEAAKVI
SWHLASDMDCVVTLTTDAARRIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKNYF
RPIGNPVFARDLLTFPDNTDHCQTVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLT
REGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPLPRLYQTLGVHIDLLQQYRSAVCKLNS
VTKELNAQIDYLNTPDMQKKKQELSEQEKNLERIEQKLGMTPTGKCELVRQAAKLNMSDS
PIPPKRMRREATKKLNRWFSAFLQNPEQVMNSFGQLE
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcaggcggcggcggtggcggtggcggtggcggcggcggcggcggcgagagc
ggccgccgcaccgtgtttctgttcgaccggcgcgaagagaagtccgaggtcggggagcgc
gcgctgcacttggacgagggcggcggcttctcgagcttccgcggtgccgtctgtcaggca
cttgggatttcatctggggagaagtttgttattacaacaacaaatagaaaagaaattact
gttgataacttcaatgaaaatgttcaagacggggtcactctgtacttacttcagtcagtc
aatcagttactgctttccgcaacaaaggaacgaattgacttcttaccacactatgacaca
ttggttaaaagtggcatgtatgaatattatgccagtgaaggacaaaatcccttaccattt
gccctcgcagaattgattgataactcactctctgctacttcacgtaatactggtattcga
agtattcacatcaaattgcttttcgatgaatcacaaggaaaacctgcagttgcagttatt
gataatggaagaggaatgacctctaagcagcttaacaactgggctgtatataggttgtcc
aagtttacaagaaaaggtgactttgaaagtgatcattccggatatgtacgtccattacca
gtgcctcgtagtttaaatagtgatatttcatattttggtgttgggggcaaacaagctgtt
ttctttgttggacagtcagccagaatgattagcaaaccttcagattctcaagatgttcat
gagctcgtcctctctaaagaggattttgaaaagaaggagaaaaataaagaagcaatatat
agtggatatattagaaaccggaagccctcagattctgctcacatcacaaatgatgatgaa
aggtttctacacagtcttattcttgaggagagagaaaaagatagttttactgcagtggtt
attacaggagtgcaaccagaacacatacagtacttgaaaaattattttcatctttggacg
agacaattagcacatatttatcattactatattcatggaccaaaaggaaatgaaacacat
gctgcaacaaaagaagttggaccattcaacaacattgatatggaaatttctatgtttgaa
aaagggaaagtacctaagattatcaaccttagagagatcaaagatgacatgcagacttta
tatataaatacggcatcagatagttttgagttcaagtcccacgtagaaggagaaggtgtg
gttgaaggaatcattcgttatcatcctttcttatatgataaagagacttatcctgatgat
ccctgttttccatcaaaattgaaagatgatgatgatgatgatgactgttttatagtagaa
aaaggagcaagagggaaaagacccatttttgaatgtttttggaatggaagattaataccc
tacacaagtgtggaagactttgactggtgtgctcctcctaagaagcgaggccttgcacca
attgaatgctacaatagaatttctggtgcattattcactaatgataaatttcaggtcagc
acaaataaactgacttttatggatctggaactaaagctgaaagataagaacactcttttt
acaaggatttttaatggacaggagcagcgaatgaaaattgacagagaatttgctttgtgg
ttgaaagactgtcatgagaagtatgacaaacaaataaaatttacactctttaaaggaata
attacacggacagaccttccttctaaaagaatgcaaagtccatgggctacatactctgca
atagaatgggatggaaagacatacaaagcagggcagttggttaagacaaccaagacactt
ccactcttttatggaagcatagtaaaattttttctttatggtgatcacgatggagatgta
tatgctacaggaggggaggttcagattgcaatggagcctcaagctttatatgatgaaatt
aaaactgttcctatcacgaagcttgacaggacagtagctgagaaaactgtcaaaaaatat
gtagaagacgaaatggcaagacttccagatcgtttatctgtaacttggcctgaaggagac
gaattgttaccaaatgaagtcaagcctgctgggacccctattggtgctttaagaatcgaa
atactgaataagaaaggggaagctatgcaaaagctccctggtacaagtcatggaggatca
aagaaactactagttgagctgaaggttattttacattcttcaagtgggaataaagaaata
atttctcatatcagccagcatgggggcaaatggccttactggttcaagaaaatggaaaat
attcaaaaattgggcaattacacattaaaattgcaagttgtattgaatgaaagtaatgca
gacacgtatgctggccggccattgccatcaaaaacatttaaattttctgtcaaagagggt
aaaccagagaaattttcagtgggccttctggatcctccatttcgtgttggagtcccattc
agtattcccctggagttgcaggatgaatttggtcatactactcaactggtaactgatatt
aagccagttcttgaagcaagtggcttatctttacaatatgaagacataagcaaaggacca
aattgtgtaattaggggtgttactgctaaaggccatgtcagctcttatcaaggcaagaac
tttagtctgaaggttattctaccaggtttgaaagaagaatctcagattttgaaaattaga
ttacttcctggccctcctcatcaattgaaagtgaaaccagattctgattttcttgtcatt
gaaaatggaacagcgttcccattccaggtagaagttttagatgaatcaggaaatatcaca
gcgcagcccaaattgattgttcattgtaagtttttaggtgctccaaaccttcctgtctac
agtgtggattgtagtaatgctggaactagtattttaactggacctgcatttcatgtgcag
aatataaagaaagaccacatactcaaagcaaggattgaaataccaagttgtaaagatgtg
ccagctgtagagaagactattagattgctccccagtagccgtgttgcaaaattgcagata
ttcagtgtagaaggacagaaggcaattcagatcaaacaccaggatgagatcaactggata
gctggagatgtcatgcataatctcatcttccaaatgtatgatgaaggagaaagagaaatt
attttaacgcctgcattagctgaaaaaattaaggttaattggacacctgagattaataag
gaacagttgctgcagggtttgctacctgatgtacaagtaccaacatctgtgaaagatatg
agatattgccaggtttcgtttcaagatgatcatgtgtctttggagagtgcatttactgta
agaccactgcctgatgaaccaaaacaacttaaatgcaagttaaaaggaggaaaaacaata
caaatgggtcaagaactccaaggagaaatagaggtaataattacagaccagtatggaaat
cagatacaaacattcacatcaagttgtttaacttctttgggaatttctggaaatggactt
gataaatccagtttgaaaattacttggcaggacagcacacagactataattataaaaggc
ataaaatttagcccaggtcctcctggaaacaaggagctctgctttgcatggcgtgagttt
tcagactttctccgggtacagctaatttcaggaccaccagctaaacttctcctggtaaac
tggccagagttaacagagcctattccagtgataaatggaaaagaattaccaaaccccctt
acaattcagctttgtgatcagtgggaaaatccttccccagtaccactagttaaaataagt
cttgtgaaagcagccatcttaaaacttagcccttcaaatcagcagcataaaactgatgac
agtggcagggctgatttgggagtttttactgtttctgcccctaggggagaacatactata
caggttaaagcaacctacaacaagaattccctagaaggacctacaattaggctaatggtt
cttccagaccctgaaaagccagtgcgtttgaatgtcaaatacgataaagacgtttctttt
tcagcaggagatatttttactgatttcatggttagtgttatttctgaagatgagagtatc
attaagaatattaatcccacacggatttctatgaaaatgtggaaactctcaggcagtgga
aaccgacaaccagccaatgtagaaacatttaattgtagtaaaataaaggataatgacaag
gaagagggcttcttttatttcagggataaagtgattccaaacaaagtgggcagttactgc
atccagtttgcttttatggtcgacaaatcttctgttctcaacagtgatcagattttagtt
gatgtcatacctaatgaaccagtcaagttagttcctgaatgtctgccatctaccccggct
gtttctaatgttccacctattgccaataggaccttagtcaaagacctgtgccttaacatc
gtggatgaacacaataatcgcactggaactaatttgattggcaagataattgctaaaatt
aaaagttctaatgatgaagatactgagattccactttttaatgggaaagttagagtggtt
gaatttccatttatcaagggatcagctgaaatcaaggatctagtactggcagaaaatagc
cctggaagggacagtgctgagtattttattgtttttgaacctcaactaccagctttatca
agagcattggaaccataccgtctaccatttatgttttataatgactttaggaagcagcag
cagatggcaacacttacaaaagagagagaccagctgtctcagtccattgttctgtaccga
aatttatttgatgccagccatcagcttattaatgaaatgaaatgccaagcccaagaagca
gggtcaaaagaagtccatttgagaaatgagctaaaaaaacatcatataaacattccaaca
ccaccacagctgtctcatattgatatgcttctgaaacaaaagttatcagaacaagaggga
ctaaagaagcaacctaggagatcatgtactcttccaaactgccctaaaggcaatccagac
attttaggaaagattgcacacttggcacagattgaagatgatgaagctgcaaaggttatt
tcttggcatttggcaagtgacatggactgcgtggttactctgaccactgatgctgcacgt
agaatctttgatgaaactcagggtcgacaacaggtgttgccacttgattctatttataag
aagactcttccagattggaacaggcctcttcctcatttacgaaatggaaaaaattatttc
agacctattggtaatccagtatttgccagagatttgttaacatttccagacaatacagat
cattgtcaaacagtgtttgggatgctattaggagataccatcattttggacaatttggac
gctgccaaccattatagaaaagaggttgttaaaatcacccactgtcctactttgctaaca
cgagaaggtgatcgaattcgcagtaatggaaaatttggaggcctacaaaataaagctcct
ccaatggacaaacttcgagggatggtatttggtgccccacttccaagactctatcagacc
ctgggtgtccacatagatcttcttcagcaatatcgttcagcagtgtgcaaactcaatagt
gtgactaaggaacttaatgctcaaatagactaccttaatactccagatatgcagaagaaa
aaacaggagcttagtgaacaggagaaaaatctggaacgaatagaacagaaactaggtatg
actccaacaggtaaatgtgaattagtccgtcaggcagctaaactcaatatgtcagacagc
ccaatcccacctaaaagaatgagacgggaagcaacaaaaaaactaaatcgctggttcagt
gcctttctacagaacccagagcaagtgatgaattccttcggccaactggaatag
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integrated database retrieval system
