Phascolarctos cinereus (koala): 110199416
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Entry
110199416 CDS
T05867
Name
(RefSeq) LOW QUALITY PROTEIN: antigen peptide transporter 1-like
KO
K05653
ATP-binding cassette, subfamily B (MDR/TAP), member 2 [EC:
7.4.2.14
]
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw02010
ABC transporters
pcw04145
Phagosome
pcw04612
Antigen processing and presentation
pcw05163
Human cytomegalovirus infection
pcw05168
Herpes simplex virus 1 infection
pcw05169
Epstein-Barr virus infection
pcw05170
Human immunodeficiency virus 1 infection
pcw05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110199416
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
110199416
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
110199416
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
110199416
05168 Herpes simplex virus 1 infection
110199416
05163 Human cytomegalovirus infection
110199416
05169 Epstein-Barr virus infection
110199416
09163 Immune disease
05340 Primary immunodeficiency
110199416
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcw02000
]
110199416
Enzymes [BR:
pcw01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
110199416
Transporters [BR:
pcw02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
110199416
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
110199416
NCBI-ProteinID:
XP_020829925
UniProt:
A0A6P5J6X1
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MSAMAWASALLLLLLMDWALLRPALPQLLLVFLPTGPPLLRLWVAGLGRWGMLWLGAHWT
TKQEGVGAKSWRTALGPLTAALPGLASFRALGGREAPRGGGESGPLRWGSRLDAFALSYA
VALLALFLWQKLGDLWVPGSPKGSGCIIHRLLGFLSPELRRFPLVMLFLLLSCLGQTAIP
FFTGRFTDWILQDEAAAIFTRNIAFLSILMLASALLEFLGNGIYNYTMGQAHNNLQEKVF
LAVLSQEADFFQQNQTGAITSWVSEDTDVLSGSLSDTLRLLFWHLFQSLCLLGLMFWASP
TLTLVTLIDFSMLFFLPKELGKWQQALAIQVQTSLTESSQVAVEAPSAMPTVRSFANEEG
EARKFAHQLXKIQKLNQKFAVAYSFNLWTTNLLGLLLRVGILYMGGKMVTHENVSRGDLV
NFVLYQIQFTTAVEALLSTLPNAQKAVGASEKIFEYLDRIPQCPSSGLLAPPTLRGLVEF
QDVFFAYSNQPDVLVLQGVTFTLYPGKVTALVEPNGAGKSSVAVLLENLYQPTKGQLLLD
RKPLPQYQHRYLHSQVAAVSQEPQLFGQNLYENIAYGLGRKPELEEIMEAARQAGAHSFI
SQLPQGYYTEIGESGSQLSGGQRQTVALAWALIRNPRILILDDATSALDTDNQLWVEQLV
YEAPRRASQAVLLITQCLSSVERADHILFLEEGVIQESGTHRQLMEKKGRYWTMVEAIGG
NSAPQE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctatggcttgggcatcagcgctgctgctcttgcttctcatggactgggcgctg
ctccgtccggcgctgcctcagctcctgcttgtgttcttgcccaccgggcctccgcttctc
cggctctgggtggctggcctgggccgttgggggatgttgtggctgggagctcattggacc
actaagcaggaaggggtcggcgctaaaagttggaggactgcgctggggcccctaacggca
gcgctgcccgggctcgcctcgttcagggctctgggagggagggaggctccaaggggtgga
ggcgagtctgggccgctgcgctgggggagccggctcgatgctttcgctctcagctatgcc
gtggcactgctggcgcttttcctgtggcagaaacttggagatctttgggtgccggggagt
cccaaaggctcggggtgcatcatacaccggctgctgggcttcctgagcccagaactgcgt
cgcttcccactagtgatgctcttcctcctgttgtcctgtctaggacagactgctatccca
ttctttactggtcgcttcacagactggatcctgcaggatgaagcagctgctatcttcacc
cgaaacattgctttcttatcgatactcatgttagccagtgctttgttagagttcttgggt
aatggaatttataattacacaatgggccaagcccacaataaccttcaggaaaaagtgttc
ctggctgtgctgtcccaggaggctgacttttttcaacagaaccaaacaggtgctatcacc
tcttgggtgtcagaggacacagacgtgctgagtggctccctgagtgacacgctaagactg
ctcttttggcacttgtttcaatcactgtgtctgctgggacttatgttttgggcatctcca
acactcactctggtcacactgattgatttttctatgctattcttcttgcccaaggagctg
ggcaagtggcaacaggccctggcaatccaagtgcagacatccctcacagaatcaagccag
gtggctgtggaggcaccgtctgctatgcccacagtcagaagctttgccaatgaggaggga
gaggcacggaagtttgcccatcagctctagaagatacagaaacttaatcagaagtttgca
gtggcctacagtttcaacttgtggaccaccaatctcttaggactcctgctgagggtgggc
attctgtacatggggggaaagatggtgacccatgagaatgtgagtagaggagaccttgtc
aactttgtcctttaccagatccagtttaccactgctgttgaggcattgctttccaccttg
cccaatgcacagaaggctgtgggagcctcagagaagatctttgagtacttagatcggata
cctcaatgcccttccagtggtctcctggcacctcctaccctccgtggcctggtagaattt
caagatgtcttctttgcttactctaaccagccagatgtcttggtcctacagggagtgaca
ttcactctgtaccctgggaaggtgacagcactagtggagcccaatggggctgggaagagc
tcagtggctgtattgctggaaaatctgtatcagcctacaaagggccagctgctgctggat
agaaagccactgccccaataccagcaccgatacctgcactcacaggtagctgcagtgtca
caagagccacagctgtttggacagaatctatatgaaaacatagcctatgggctgggccgg
aagccagagctagaggagatcatggaggctgccaggcaggctggagctcacagtttcatc
tctcagttgcctcagggctactacacagagataggagagtctgggagccagctgtcaggt
ggtcagcggcagacagtggccctggcttgggctctgatccggaaccctcggatcctcatc
ctagatgatgctaccagtgccctggatacagacaatcagttatgggtggagcagcttgtg
tatgaggcccccaggagggcctctcaggcagtgctactcatcacccagtgtctcagctct
gtggaaagggctgaccacatactcttcttggaggagggggtcattcaggagagtgggacc
cataggcagcttatggagaaaaagggccgatactggaccatggtggaggccataggtggg
aactcagctcctcaggaatga
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