Phoenix dactylifera (date palm): 103701483
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Entry
103701483 CDS
T03274
Name
(RefSeq) DNA ligase 4 isoform X5
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103701483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pda03400
]
103701483
Enzymes [BR:
pda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103701483
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103701483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
103701483
NCBI-ProteinID:
XP_008781769
UniProt:
A0A8B7BMW3
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All DBs
Position
1:complement(18657340..18692895)
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AA seq
1169 aa
AA seq
DB search
MTDETVRFGVLCSMFEAMVRDRSAAKKRKRFRTLLDRVYTGRDYFSAVRLILPALDRERC
SYGLKESALAAALVDALGLAKDSPDALRLVNWRKGGARSGANAGNFALVAAEVLQRRQGM
ASGGLTIKELNDALDQLASKENSQTSFNREGKTAVLSGLIKKTNALEMKWILMIILKDLK
LGISEKSIFHEFHADAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLALRVT
DAATAWRKLHGKHVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKHGMLNVILRNIT
VERCILDGEMLVWDTSTQRFAEFGSNQEIAKAAREGLESDRQLCYVAFDILYVGDTSVIH
QSLTERHDLLRKVVKPLKGRLEILTPNGGLNDRRLQGEPCWSIVAYTVEDVERFFKETIE
NRDEGIVLKDLGSKWEPGDRSGKWLKLKPDYIHAGADLDVLIIGGYFGSGRRGGEVAQFL
VGLAVRSDSTSCPKRFVSFCRVGTGLSDEELDTLITKLKPYFRKNEYPKKVPPFYEVTNN
SKERPDVWIDSPDKSVILSITSDIRTIKSEVFAAPYSLRFPRIHRVRYDKPWHECLDVQS
FVDLVHSSNGNTQRGTDHGGLQNHGSKHVKSTKKGEKKNVSIVPAHLIHTDISGVKEETL
IFANMMFYFINVPPSSSVDYFHKIVVENGGTFSMNLNDSVTHCIAAERKGIKYQAAMRHR
DIIHYSWVLDCCKQKRLLLFHPKYYLFLADSSKRKFQEEIDTFSDYYYCDIDIADIKQVF
SNMHGPEYANNIDYYKKKYCPVEALCLFQGCCVYFYKSMSVINTCDEVISELALRRMRLE
ITMHGGEVCSGLQCATHLIVCSTTKEANNFDEIYKSFPSSQRHLLHDRRLHVVMHQWLED
SLETGKKLHEDSYNLKPDTLEEIKIDESRHNLVSPVTTINTEKQSVSRLIIGEKRKRDRP
THADTRKGRTGPRHKRTMRARIGNRLAKIDADEAENSDSSDETSMGKTLKSREESEIDIT
ESVGVKNQESFSDGSCQREALGSRKESQGDMEESEDIKYQAPHFSIQVAEYHQGSQIVTP
EDRTNERFDNVQTLNVTETGNKGTGEKLEQMVDPLRAILLDMIPSLSQNNVETGSSIPDG
KKAQPDPHTNPVKKKVSYKDVAGQLLKDG
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgagacggtgagattcggggttctgtgcagtatgttcgaggcgatggtgagg
gatcggtcggcggcgaagaaacggaagcggttcaggacgctgctggaccgggtgtacacg
gggcgggactactttagcgccgtccggctcatcctcccagccctcgaccgggagcggtgc
tcgtacgggctcaaggagtccgccctcgccgccgccctcgtcgacgcccttggcctggcc
aaggactctcccgacgccctccgcctcgtcaactggcgcaagggcggcgcccgctcgggt
gccaacgccggcaacttcgcccttgtcgccgccgaggttctacaacgtaggcaaggaatg
gcttctggtgggcttacaatcaaggagttgaatgatgctcttgatcaactagcctcaaaa
gaaaatagtcaaacatcctttaacagggaagggaagactgctgttctttctggtctcatt
aagaaaacaaatgccctggaaatgaagtggattctaatgatcattcttaaagatctgaag
ctggggattagtgagaagagtatatttcatgagtttcacgcagatgctgaagatttgttc
aatgtcacttgtgacctaaaactagtctgtgaaaaactgaaagatcgaagtcaacgacat
aaacggcaggatatagaagtgggaaaagctgtaaggcctcagctagctctgagggtcact
gatgctgcaactgcatggaggaagcttcacggaaagcatgtggttgtcgagtgcaagttt
gatggtgatcgcattcaaatccacaagaatggagaagaaattcactttttttcacggaat
tttctcgatcatcctgagtacaaacatggcatgttgaatgttattttacggaacatcact
gttgagaggtgtattctggatggtgaaatgcttgtttgggacacgtcgactcaacgtttt
gcagaatttggttcaaatcaagaaatagcaaaggcagctagagaaggattagagagtgac
cgccagctgtgctatgttgcttttgatattctttatgttggagacactagtgttattcat
cagagcttgacagaaagacatgacctcctgcgaaaagttgtaaaacctttaaagggtcgc
ttagaaattctgacccctaatgggggtcttaatgatcgtcgtttgcaaggcgaaccatgt
tggtccattgttgcttatactgtggaagatgtggagagatttttcaaagaaactattgag
aacagagatgagggaattgtgttgaaggaccttggttccaaatgggaacctggtgatcga
agtggaaagtggttgaagttgaaacctgattacatacatgctggtgctgatctggatgtg
cttattataggaggatattttggttctggccgtcgtggaggagaggtagctcagtttttg
gtgggtcttgcggtgcgttcagattctactagctgtccaaaacgatttgtttcattctgt
cgagttggtactggtctctctgacgaggagcttgatactctcattaccaaattgaagccc
tatttcaggaagaatgaatatccaaaaaaagtgccacccttttatgaagtaacaaataat
tcaaaggagaggccagatgtttggattgacagccctgacaaatcggtcatactttcaata
actagcgatatccgaacaataaagtctgaggtatttgctgcgccatacagtttgagattt
ccacgtattcatcgtgtgagatatgacaagccatggcatgagtgccttgatgttcagtca
tttgtggacttggtacattcaagcaatggcaatacacagaggggaaccgatcatggaggt
ctacaaaatcatggatcaaaacatgtaaagtccacaaagaagggagagaagaaaaatgtt
tccattgtccctgctcatttgatccataccgacatctctggtgttaaggaggagacactt
atatttgcaaatatgatgttttattttatcaatgttcctccatcctcttctgtagactac
tttcataaaattgtggttgagaatgggggaactttctcaatgaatctcaatgactcggtt
actcactgcattgcagctgagagaaaagggatcaagtatcaagccgctatgcgccacaga
gatatcattcactattcttgggtcttggattgttgcaaacaaaagcgtcttctacttttc
catcctaagtactacttatttcttgcagattcttcgaagagaaagtttcaagaggagatc
gacacattctctgattattattactgcgatatagatattgcagacattaaacaggtattc
agcaatatgcatggaccagaatatgcaaacaacatagattattataaaaagaagtactgt
ccggtggaagcattgtgcttgtttcagggttgttgtgtttacttctacaaatcaatgtct
gttataaatacctgtgacgaagtaatatcagagcttgctttaaggaggatgaggcttgaa
ataaccatgcacggtggtgaagtttgcagcggtcttcaatgtgctactcatctgatagtg
tgttcaacaacgaaagaagccaacaactttgatgaaatatataaaagttttccatcttct
caaagacacctactacatgacagaaggctacatgttgtgatgcatcagtggttggaagat
tcattagaaacaggcaagaagttgcatgaagattcttataacttgaagcctgatacttta
gaagaaattaagattgatgagagcaggcacaatctcgtatctcctgtaactacaattaat
acagaaaaacagagtgtctctagactaattataggtgaaaagaggaaaagagataggccc
acgcatgctgatacaagaaagggtagaacaggtccaagacacaaacggacaatgcgggca
aggattggaaatagacttgcaaaaatagatgcagacgaagcagagaacagtgattcctca
gatgaaacttctatggggaaaaccctgaagtcaagggaagagtctgagattgacatcaca
gaaagtgtgggtgtcaaaaatcaagaatcattttcagatggaagttgtcaaagagaagcc
ttaggatcaaggaaagagtctcaaggtgacatggaggaaagtgaggatatcaaatatcaa
gcaccacattttagtattcaagtagctgagtatcatcaagggtctcagattgtaactcca
gaagatagaaccaatgaaaggtttgacaatgtgcaaactttgaatgttacagaaacaggg
aataaaggaactggtgaaaaattggaacaaatggttgatccactgcgtgcaatattattg
gatatgataccaagtcttagccagaataatgtggaaactggaagctccattcctgacggc
aagaaagcacagccagacccccacaccaacccagtgaagaagaaagttagctacaaagac
gttgcaggtcaactcctcaaagatgggtaa
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