Phoenix dactylifera (date palm): 103712565
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Entry
103712565 CDS
T03274
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
103712565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103712565
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103712565
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
103712565
NCBI-ProteinID:
XP_038985371
UniProt:
A0A8B9AF75
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Position
8:28342305..28377594
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AA seq
912 aa
AA seq
DB search
MGVPAFYRWLADRYPLAVADVIEEEPGVAADGLPLAVDPSRPNPNGVEFDNLYLDMNGII
HPCFHPEGRPSPATYDDVFRSIFAYIDHLFGLIRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAAAEEERLRKESEAERRNLSAQGKPETSDSNVITPGTQFMAVLSVVLQYYIK
LRLNRTSGWQYIKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIML
SLATHEVHFSILREVILMPGQQEKCFLCGKIGHFAADCRGNADKQISELQAMNDTPIHKK
KYQFLNIWVLREYLENDLQIPDSPFEINFERLVDDFVFLCFFVGNDFLPHMPTLEIREGA
IHLLMFVYRREFRAMGGYLTHAGEVSLDRVEHFIQSVAVYEEQIFKKRTRIQQAIKNNEE
QKLKLKGENLEDPLFASPDKVKLGEPGYKERYYMEKFEVKESKSIDDIRRNVVQCYVEGL
CWIMRYYYQGVCSWQWFYPYHYAPFASDLRGLADLEITFFLGQPFKPFDQLMGTLPAASS
NALPKHYGALMMNPKSPLSSFYPDDFEIDMNGKRFAWQGVAKLPFIDERRLLAETKKLED
TLTEEEKFRNTMMFDIIYVYINHPLASQIYTLYQMCYQLSFQEAPITPIDAGVSDGMNGF
LCLCERNFYSVTILAPVKGLSSLENNQVLNATYLNPTYHQHIPEPPEGVITPEKVLKPQD
IKPFPVLWHEDNSRHQPGRERSQLSVARSGPHLGAAAHRLLKNTLQLKTNVSGLLDRPYK
NALQAVYKPRPTGPLGHKRSFVRDLSYYRSSNHKPRDFPNSQSVQNSNEAECSRQNLRIQ
EKLISQNQQQNIYIGMSNMRIDEQENCQQHPKMPDDEFCSNRRQPILNGPPLPLPPTNWI
RRQSVRDPSGRT
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggcgttctataggtggcttgcggaccgctaccctctcgcggtggcggac
gtgatcgaggaggagccgggagttgccgccgatggcctcccccttgcggtggatccctcc
agacctaaccctaacggcgtcgaattcgacaatctctacctagacatgaacggcatcatc
catccctgcttccaccccgaaggccggccttcacctgccacttatgatgatgtatttagg
tctatatttgcctacattgaccatctatttgggctaattcgcccaagaaagctgctgtac
atggcaatagatggtgttgctcccagggctaaaatgaatcaacagcgctctcggcgtttt
agagctgcaaaagatgcagctgaggcagctgctgaagaggaaagattgagaaaagagtct
gaggctgaacgaaggaatttgtctgcccagggaaagcctgaaacatctgactcaaatgtt
atcactccagggactcagtttatggctgtgctctcagttgtgcttcagtattatataaaa
ttaagactgaaccggacttctggctggcaatatattaaggttatactctctgatgcgaat
gttcctggtgagggagaacacaaaatcatgtcctacatccggttacagcgtaatctgcct
ggttatgatccaaacacacgccattgtctatatggattggatgcagatctgattatgctg
tctttggctactcatgaggttcacttctcaattttaagagaggtgatcctgatgcctgga
caacaggagaaatgctttctctgtggtaaaattgggcattttgcagctgattgtagaggt
aatgctgataaacaaatttctgagttgcaggctatgaatgacaccccaattcacaaaaag
aaatatcagttccttaatatctgggttttgcgagagtacttggagaatgacttgcaaatt
cctgattctccttttgagataaactttgagcggcttgtggatgattttgtctttctatgt
ttctttgtgggaaatgattttctcccacatatgcctactttggaaatccgtgagggtgca
attcatctgctaatgtttgtttatagaagagagtttagagctatgggtggatatctcaca
catgcaggggaggtttcattggaccgagttgaacattttatccagtcagtagcagtttat
gaagagcaaatttttaagaagcgcactcgtattcaacaggcaattaaaaataatgaagag
cagaagcttaagttgaagggagagaatcttgaggatcctctgtttgcatctccagacaag
gtaaaattaggagaacctggatataaagaaaggtactacatggagaaatttgaagtaaaa
gagtcaaagtcaattgatgatattaggagaaatgttgtccagtgctatgtagaaggcctt
tgctggatcatgcgatattactatcaaggtgtctgttcatggcagtggttctacccatac
cattatgctccatttgcatctgatcttagaggtttggccgatctggagatcacctttttc
cttggacagccatttaaaccatttgatcaactaatgggaacactccctgctgctagttca
aatgcattgcccaagcattatggagcattgatgatgaatccaaaatcacctttaagctcc
ttttatcccgatgattttgaaatagacatgaatggtaaacgctttgcatggcagggtgtt
gccaagctgccgttcattgatgagagacgtctacttgctgagacgaagaagcttgaggat
acgttgacggaggaagaaaagtttcggaacacaatgatgtttgatataatttatgtttac
ataaatcatcctttggcttcacaaatttatacactatatcagatgtgctatcagctttct
tttcaagaagcaccaattactccgattgatgcaggtgttagtgatggaatgaatggattc
ctttgtctatgtgagaggaacttttacagcgtaacgatacttgcaccggtgaaagggttg
agcagtcttgaaaataaccaagttttgaacgccacttatcttaatcctacataccaccag
catattccagaacctcctgaaggtgtgatcacacctgaaaaggttttgaaacctcaagac
attaaaccattccctgtgttatggcatgaagacaatagtcgacatcagcctggcagagag
aggtcacagctgtctgtagctagatcgggtccgcacctaggtgcagcagcccatcgtctc
ctgaaaaatacactgcagctgaagaccaacgtctcaggattgcttgacagaccctacaag
aatgccctgcaggcagtttacaagccaaggccaaccggacctctagggcacaagagaagc
tttgtccgagacctgagctattaccgttcctcaaatcacaagcccagagattttccaaat
tctcagtcagttcagaactccaatgaagccgaatgcagcaggcagaacctcagaatacag
gaaaagttgatttctcaaaatcagcagcagaatatatatatagggatgtcaaatatgaga
attgatgagcaggaaaattgccaacaacatccaaagatgccagatgatgagttctgttca
aatcggcggcagcctatcctaaatggacctccattgcctttgcctcccacaaactggatc
cgtaggcaatctgtaagagacccctcaggtcgaacatga
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