Paramisgurnus dabryanus (large-scale loach): 135738786
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Entry
135738786 CDS
T10799
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04115
p53 signaling pathway
pdab04145
Phagosome
pdab04148
Efferocytosis
pdab04350
TGF-beta signaling pathway
pdab04510
Focal adhesion
pdab04512
ECM-receptor interaction
pdab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
135738786 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135738786 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
135738786 (thbs1b)
04148 Efferocytosis
135738786 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
135738786 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
135738786 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135738786 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pdab04131
]
135738786 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pdab00536
]
135738786 (thbs1b)
Membrane trafficking [BR:
pdab04131
]
Endocytosis
Phagocytosis
Opsonins
135738786 (thbs1b)
Glycosaminoglycan binding proteins [BR:
pdab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135738786 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
TSP1_CCN
cEGF
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
135738786
NCBI-ProteinID:
XP_065112964
LinkDB
All DBs
Position
12:16783066..16793030
Genome browser
AA seq
1171 aa
AA seq
DB search
MKSAAIFLLLMLCNCESARFAESRDDNSVYDLFELIQVPRKNHGVTLVKGDDPYSPAYKI
MNPDLIPPVPESAFRDLIDSIHADRGFLFLANFKQFKKTRGSILSVEKKDGSGAVFEIIS
NGKANTLDIVFSTENKQQVVSIDEADLAVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA
SIQNILTQETPGVANLRLGKGAVKDKFMGVLQNVRFVFGTTLEAILRNKGCQRATMSNFI
NLENTINGSRPAIRTDYTGHKTKDLQMICGFSCEDMASMFKELKGLGVVVQELSNELRKV
TDENNMLMNHMGVHSGVCLHNGIMHKNKDEWTVDDCTECTCQNSATLCRKISCPIIPCAN
ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ
TRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGVGVITRIRLCNSPTPQMEGKDCQGEGR
QTERCEKSPCPINGGWGPWSPWDTCSTTCGGGFQSRKRLCNNPVPKYGGKECVGDVKASQ
QCNKQACPIDGCLSNPCFAGAQCTSFPDGSWKCGKCPTGYTGNGIDCKDINECEEVPDAC
FEFNGVHRCENTVPGYNCLPCPTRYTGPQPFGKGVEDAASKKQVCTPRNPCLDGSHDCNK
NARCNYLGHFADPMYRCECRPGFAGNGHICGEDTDLDGWPNSDLVCVENATYQCKKDNCP
NLPNSGQEDYDKDGVGDACDNDDDDDGITDDRDNCPLVFNPRQYDYDRDDVGDRCDNCPY
NSNPDQTDTDNNGEGDACAIDIDGDGILNENDNCPYLYNVDQKDTDLDGVGDQCDNCPLE
HNPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIANANQADHDKDGKGDACDYDDD
NDGIPDEKDNCRLVPNPDQVDSDGDGRGDACKDDFDDDKVPDIYDVCPENVDISETDFRK
FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDRD
DDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLRNA
LWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIY
DKTYAGGRLGLFVFSQEMVYFSDLKYECRDM
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcagctgcgatctttttgctactgatgctttgtaactgcgagagcgcgagattc
gcagaaagtagagatgacaacagcgtttacgacctgttcgagctcatccaggtgccgagg
aaaaatcacggggtcactctagtaaaaggcgacgacccgtacagtcccgcctacaagatc
atgaaccccgacctgattcccccggttcccgagagcgctttcagggacctgatcgactcc
attcacgcggacagaggatttctgttcctggccaatttcaagcagtttaagaagacgagg
ggaagcatcctgagcgtagagaaaaaggacgggtccggagccgtgttcgagatcatttcc
aacgggaaggcgaacaccctggacatagttttttccaccgagaataaacaacaggtcgtg
tccatcgatgaagcggatttggcggtgggacattggaagaacatcacgcttttcgtgcag
gaggacagggttcaattttatgtgggatgcgaggaggtgaatacggcggagcttgatgcc
tctatccaaaacattctcacccaggagaccccaggtgtggcgaacttgaggctcggaaag
ggcgcagtgaaggacaagttcatgggcgtgctgcaaaacgtgcgctttgtcttcgggacc
acactggaggctatactgaggaataaaggatgccaacgcgcaacaatgtctaattttatc
aaccttgaaaataccataaatggatccagacctgcaatcagaactgattacactggacac
aaaacaaaagaccttcagatgatctgtggcttttcttgtgaagatatggccagcatgttc
aaggaactcaaaggtcttggtgtggtggtgcaagagctatccaatgaactccgcaaagta
acagatgagaataacatgcttatgaatcacatgggtgtccatagcggtgtctgtcttcac
aacggaataatgcacaaaaacaaggacgaatggactgtagatgactgcacagagtgcact
tgccagaactctgcaacattgtgccgcaagatttcgtgtcccattataccatgtgcgaac
gccacagtgcctgatggggagtgctgccctcgctgtggaaccccaagtgactctgctgag
gacggctggtccccctggtctgaatggacccattgttccgtgtcctgtggaaggggcatt
cagcagcgcgggcgctcctgcgaccgcatcaataacaactgcgaaggcacatcggtgcag
acaagagactgctaccttcaggagtgcgacaagcgattcaagcaagatggcagctggagt
cactggtcaccttggtcctcttgttctgttacctgtggtgtcggtgtcatcacccgcatt
cgtctctgtaactctccaactccgcagatggagggcaaagactgccaaggtgaaggccga
cagaccgagaggtgtgagaaatcaccctgtccaatcaatggtggctggggaccatggtct
ccttgggacacttgctccactacctgtgggggtggctttcaaagccgtaagcgcctttgc
aataatccagtacctaagtatggtggtaaagagtgtgtcggagatgtaaaggcctcacag
caatgcaacaaacaagcctgcccaattgatggatgtctttcgaatccatgctttgctggg
gcccaatgcacaagcttcccagatggatcctggaaatgtggaaaatgtcccactggttac
acgggcaatggaattgactgcaaagacatcaatgagtgtgaggaagtccccgatgcttgc
tttgaattcaatggagtccacaggtgtgagaacacagtgcccggctacaactgcctgcca
tgccccacacgctacaccggcccacagccgtttggaaaaggggttgaggacgccgcttct
aagaaacaggtgtgcacgccgcgtaatccatgcctcgatggcagccatgactgcaacaag
aacgctcgctgcaactacctgggccattttgccgatcccatgtaccgctgcgagtgcagg
cccggctttgctggaaacggacacatctgtggagaggacacggatcttgacggctggcct
aattctgatcttgtgtgtgtggagaatgcaacctatcaatgcaagaaggataactgtccc
aatcttccaaactctggccaagaagactacgacaaggatggagtcggcgacgcatgcgat
aatgacgatgatgacgatggcattactgatgatcgggacaactgcccactcgtgttcaac
ccaagacagtacgactacgaccgtgatgatgtgggagaccgctgcgataactgtccctac
aacagcaacccggaccagaccgacacagataacaatggtgaaggggatgcctgtgccatt
gacattgatggagatggtattttgaatgagaacgacaactgcccgtatctgtacaatgta
gaccagaaagacacagatctagatggagtgggtgaccagtgtgacaactgccctctggag
cacaacccagaccagcttgactctgactctgatcgtgttggagacaaatgtgacagcaac
caggatatcgatgaggacggccaccaaaacaacctagacaactgtccatacattgccaac
gcaaaccaggccgatcatgacaaggatggcaaaggagacgcctgtgactacgatgatgat
aacgacggcatccctgatgaaaaagataactgcagattggttcccaatccagatcaagtg
gattctgatggcgatggacgtggagatgcttgtaaagatgattttgatgacgacaaagtt
ccagatatctatgatgtgtgcccagagaacgttgacataagtgagacagacttccgcaag
tttcagatggtaccactggatcccaagggcacttcacagatcgatcccaactgggttgtt
cgacaccagggcaaggaacttgttcagacagttaactgtgacccaggcattgctgtcggt
tttgatgagttcaacgctgtggactttagcgggactttcttcattaacacggacagagac
gacgactacgccggatttgttttcggttaccagtccagctctcgcttctacgtggttatg
tggaagcagatcacacagacttattggtcccacacaccaaccaaagcacagggttattca
gggctgtcaatcaaagtggttaactccaccaccgggcctggtgagcatttgaggaacgct
ctctggcacaccggagatactccaggacaggtgcgcacattgtggcatgacccaaagaac
gttggatggaaggacttcactgcttacagatggcacttgacccacagaccaagaactgga
cacataagagtggtcatgtatgaaggcaaaaaaatcatggcagattccggtagaatttac
gacaagacatatgcaggtggaagactgggtctctttgttttctcacaagagatggtttac
ttttcagacctcaaatatgaatgcagagatatgtaa
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