Paramisgurnus dabryanus (large-scale loach): 135740873
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Entry
135740873 CDS
T10799
Symbol
slit1b
Name
(RefSeq) slit homolog 1b
KO
K06838
slit 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pdab00536
]
135740873 (slit1b)
Glycosaminoglycan binding proteins [BR:
pdab00536
]
Heparan sulfate / Heparin
Axon guidance molecules
135740873 (slit1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
hEGF
LRR_9
LRRNT
LRR_1
LRRCT
EGF_TEN
LRR_14
EGF_3
EGF_2
JAG1-like_EGF2
EGF_CA
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
135740873
NCBI-ProteinID:
XP_065115486
LinkDB
All DBs
Position
24:21229231..21299054
Genome browser
AA seq
1528 aa
AA seq
DB search
MLGWAGLWIWGALGALVLVGQSEACPPHCSCTGTTVDCHGLAFKNVPRNIPKNTERLDLN
ANNLTHIGKDDFAGLKHLRILHLMDNQIVSIDKGAFSDLKELDRLRLNRNRLQQIPELLF
LKNPALSRLDLSENFIQVIPRRAFRGATDIKNLQLDKNHISCIEDGAFRAMRVLEVLTLN
NNNISTIPISSFNHMPKLRTFRLHSNSLRCDCHLSWLSQWLRQRPALGLYTQCSSPSNLH
GLNLAELQKKEFTCAGILDSSPQPCSLASGSCPPMCTCSNNIVDCRGKGLTAIPANMPES
MTEIRLEQNGIKSVPPGAFAPYKRLRRIDLSNNQISEIAPDAFQGLRSLNSLVLYGNKIT
DLPRGVFDGLSALELLLLNANKIHCVRVNVFQDLENLSLLSLYDNKIQTLAKGTFAPLKS
IQTLHLAQNPFVCDCSLKWLADFLRSNPIETSGARCSSPRRLANKRISQIKSKKFRCSAK
EQYHIPGAEDTRLNKDCNSKPVCPPKCRCEATVVDCSNLRLTKFPEHLPLSTTELRLNNN
DLSILEATGLFRSLTHLKKINLSNNKISEIEDGAFDGASSVVELHLTANHLVSVRGGMFR
GMDGLRMLMLRNNHIRCVHNSSFAGLQNVRLLSLYDNQLTTIMPGAFDTLPNLSTLNLLA
NPFNCDCRLSWLGEWLRSRQIVTGNPRCQNPPFLREIPLQDVAKPDFRCDKAIVEDNTGC
VPKPECPEECNCVDTVVRCSNKHLVGLPHGVPHNVTELYLDGNQFVAVPKELSTFKHLQL
VDLSNNKISSLSNSSFANMSQLTTLILSYNALNCIPPLVFGGLSSLRLLSLHGNNISELH
QEIFRDSASLSHLAIGANPLYCDCRMRWLSDWVKSGYKEPGIARCAGPKGMDGKLLLTTP
GNNFQCTGLVDPSVSGKCSPCSSNPCQNQGRCHNDPVHLYKCICPQGYKGKSCEIPIDAC
EGNPCVNGGTCNTKEARKGFSCTCPLGYDGQFCEVDVDDCVDNKCENGTICVDGVGNYTC
VCPHPFSGPKCEEYEEDLCYPGQNPCHRGSTCIPTVTGPKCICPPGFVGDDCSIDYNECN
GHYCQNGARCVDHVAGYTCVCPQGYSGRLCEVALIPSGCELVHCENGAPCVESEAGAACQ
CLPGFGGSHCEKLLSVNFIDRDSYLLLSDLKNWPQTNITLQVSTAEDNGVLLYNGVNDHI
AVELHEGHVKVTYDSGNQPGSTIYSSEIVNDGEFHTVELVTYERMVNLSVDGGLPTTLDS
LGHVQPLIRDAPLYVGGKPENVQSLSFNQWPGLNGSSFQGCIRNLYINNELQDFTRTQMK
PGVVPGCQPCQELRCVHGLCQPATAVGPVCHCKAGWGGPHCDQVLLMAAVNPCQKNKCVH
GTCVPVDIQSYRCECAEGFHGSLCSQPEVPPDPCTALTCQHGYCELSQTGQARCICDSGY
SGRLCDIVSPCQGESVRDFQRIRRGEVQCRSTQPLSWLECRGGCRADTGLCCTSTRVRRR
RYSFECDDGSSFTQDVEKTVECGCDKCV
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atgctgggttgggctggtttgtggatttggggtgcactgggtgccctggttctggtgggt
cagtctgaagcgtgcccacctcactgttcctgtacggggaccaccgtggactgccatgga
cttgccttcaagaatgtgccacgaaatataccaaagaacacagaaagactagacttgaac
gcaaacaatctgacacacattggaaaggacgactttgctggactgaagcacctgaggatt
ttacacctcatggataatcaaattgtttctatagacaaaggagcattcagtgatctcaag
gagttggacagattgcgtttaaacagaaatcgtctccagcaaatccccgagcttctgttc
ctgaagaatccggctctctccagactggacttaagtgaaaactttatacaggtcatacca
aggagagcgtttcgaggtgctacagacatcaagaacttacagctggacaagaaccacatc
agctgcattgaggatggagcatttcgtgccatgagagttttggaggtcctcacactgaac
aacaacaatatcagcaccatccctatctccagcttcaatcacatgcccaaattacgtaca
ttccgtctgcactctaacagtctgcgatgtgattgtcatttgtcctggctgtctcaatgg
ctcagacagagaccagcgctgggtctgtacacccaatgcagttctccatccaacctacat
ggcctcaacctcgctgaattacaaaagaaagagttcacgtgcgctggtattttggattca
agtccccagccatgtagcctggcatctggttcttgtccgcccatgtgcacctgcagtaac
aatattgtggactgtagaggaaaaggtctcacggccattcctgccaatatgccagaaagc
atgactgaaatacgattagagcagaatggtattaaatctgttcctccaggagcgtttgcc
ccctacaagagactgcgtagaattgatttgagtaataaccaaatatctgaaattgcccct
gatgcgtttcaaggtttgcgctcactcaactcactggttctttatggaaataagattaca
gatctgcctcgaggtgtttttgacggattgagcgcattagaattactactattaaatgcc
aataaaatccactgcgttcgtgtaaacgtctttcaggacctcgaaaacctgtctctattg
tctctgtatgacaataagatccagactttagccaaagggacatttgctccactgaaatcc
atccagacactacacttggctcagaatccattcgtctgtgactgcagtttaaagtggctt
gctgattttttgcgctccaacccgattgagaccagcggtgcacgctgctcgagcccacga
cgtctcgccaacaaacgcatcagtcaaattaaaagcaagaagtttcggtgttcagccaag
gaacagtaccacattccaggtgcggaggacacgcgcttgaataaggactgtaacagcaag
cctgtgtgtccaccaaaatgtcgctgtgaagctactgtagtggactgctcgaatttacgt
cttaccaagttcccagagcacctgccactctctactactgaacttcgtcttaataacaac
gacctgtccatcctggaggcaacaggactgtttcggtccctcacacatctgaaaaagata
aaccttagcaacaataaaatctctgagattgaagatggagctttcgatggtgcgtcgtct
gtggttgaacttcacctgactgccaatcacttggtgtccgtgcgtggaggaatgttccgg
ggaatggacggattacgcatgctgatgctcaggaataatcacatccgttgcgtccacaac
agcagctttgctggccttcaaaatgttcgtctgctctcgctctacgacaaccagcttacc
acaatcatgccaggagcctttgacacactaccaaacctctctaccctaaatctgctggca
aacccttttaattgcgattgtcgtctgtcttggttgggagaatggcttcgctctcggcag
attgtgacagggaatcctcgctgccagaaccctcctttcctgagagagatcccgttgcag
gatgtggcaaagcccgacttccgctgtgacaaagctattgtcgaagacaacactggctgt
gtccccaagccggagtgtcccgaggagtgcaattgtgtggatactgtggtgcgctgcagt
aacaaacacttggttggccttccccatggcgtcccacacaacgtcactgaactatacctg
gatgggaatcagtttgttgccgtacccaaagagctttcaacatttaagcaccttcagctc
gtggacttgagcaacaataaaatcagttccctatccaactcatctttcgccaacatgagc
cagctcaccacactcatcttgagttacaatgcactgaactgtattcctcctcttgtgttt
ggaggtctgtcctctctacgattgctctctcttcatggtaacaatatttccgaattacac
caagaaatcttcagagattctgcatctttatcacacctggccatcggtgcaaatccgctc
tactgtgattgtcgtatgcgttggctgtctgactgggtgaaaagtgggtataaggaaccc
ggcatcgcccgctgtgctgggccaaaggggatggacggaaaactgctgcttaccacgcca
ggcaataatttccaatgcacaggccttgtggatccatccgtgtctgggaaatgcagtcca
tgttcctcaaacccctgccaaaatcaaggccgatgccacaatgatcctgtacatctgtac
aaatgcatctgtcctcagggttacaagggaaaaagctgtgagattcctatcgacgcctgt
gaaggcaatccatgtgtaaatggaggaacttgcaacacgaaagaggcaagaaaaggcttc
agctgtacgtgtcctctgggatacgacggtcagttctgcgaggtagacgtcgatgattgt
gtagataacaagtgtgaaaatggcaccatctgtgtggatggagtgggaaattacacctgt
gtctgtcctcatcccttctcaggcccaaaatgtgaagagtatgaggaagatctgtgttat
cctggacaaaatccttgccatcgtggctctacttgtataccaacagtcacaggaccaaaa
tgcatctgtccgcctggttttgttggagatgactgcagtatagattataatgaatgtaat
gggcattattgtcagaatggggctcggtgtgtagatcatgtagcaggttatacctgtgtt
tgcccacagggttacagtggtcggttatgtgaagtggctcttattccatccggctgcgag
ttggtgcactgtgagaatggcgccccctgtgtggagagtgaagcaggtgcagcgtgtcaa
tgtctgcctggattcggggggtcacattgtgaaaagcttctcagtgttaacttcatcgac
agagactcgtacctgctgctgagtgaccttaaaaactggccccagaccaacatcactcta
caggtctctacggcggaggacaatggcgtccttctctacaatggagtcaatgaccacatt
gctgtagagctgcacgaaggacacgtcaaagtgacctacgattcaggaaaccagccaggc
agtactatttacagctcggaaatagtgaacgatggagagtttcatacagtcgagttggtt
acatatgaacggatggtcaatttatctgtcgatggagggcttcccacgactctagacagc
ctgggacacgtccaacctctcatcagagacgccccactatacgtcggtggtaagcctgaa
aacgtccagtcgttgtcgtttaaccagtggccggggcttaatggatccagttttcagggt
tgcattcggaatctgtacattaataacgagctacaggacttcactcgtacccagatgaag
cctggggtggtgcccgggtgtcagccttgtcaggaactccgctgtgtgcatggactgtgc
caaccggctaccgctgttggacccgtgtgtcactgcaaggcgggttggggcgggccacac
tgtgatcaagtccttcttatggcggccgtcaacccttgccagaaaaacaagtgtgtccat
ggtacgtgtgttccagtagacattcagtcttatcgctgcgagtgcgcagagggttttcat
ggctctttatgcagtcaacctgaagttcccccagatccctgtacagctctcacctgccaa
catggctactgcgagttatcacagacgggtcaggcacggtgcatctgtgacagtggctac
agtggccgattatgtgacatagtgtctccctgtcagggtgaatccgtgagggatttccaa
cgcatacgtcgcggtgaagtccagtgtcggagcacgcagccgctgtcgtggctggagtgt
cgcgggggctgcagggcggacacgggcctctgctgcaccagtaccagagtacggcgaaga
cgctacagttttgagtgtgacgacggcagttcatttacgcaggacgtcgagaagaccgtt
gaatgtggttgtgataagtgtgtgtag
DBGET
integrated database retrieval system
